Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 6.8e-159 563.9 280 100.0
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 4.6e-139 498.0 279 88.2
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 6.6e-138 494.2 281 86.8
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 9.9e-134 480.3 272 87.1
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.1e-115 419.5 277 74.0
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.1e-108 397.1 316 65.5
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.3e-104 383.6 274 68.6
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 5.9e-94 348.2 283 60.8
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.3e-93 347.1 282 59.9
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.9e-92 343.2 283 60.4
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.2e-92 342.4 282 59.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 1.6e-91 340.1 282 58.9
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.7e-91 339.3 286 59.1
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.7e-91 339.3 281 58.7
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 7.9e-91 337.8 283 59.0
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.0e-90 335.9 283 59.0
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 5.7e-89 331.6 280 56.8
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.8e-88 329.3 283 57.6
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 3.7e-88 328.9 276 59.1
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 4.8e-88 328.6 276 59.1
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 6.3e-88 328.2 289 58.1
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.4e-87 326.2 282 57.4
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 3.1e-87 325.9 289 57.8
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 4.1e-87 325.5 279 55.6
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 5.3e-87 325.1 289 57.8
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.3e-87 325.1 289 57.8
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 5.3e-87 325.1 281 56.9
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 9.1e-87 324.3 278 58.6
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 9.1e-87 324.3 281 55.9
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.2e-86 323.9 283 58.0
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.2e-86 323.9 282 57.1
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.2e-86 323.9 282 56.7
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 1.2e-86 323.9 287 56.8
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.0e-86 323.2 283 58.0
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 2.0e-86 323.2 283 58.0
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 2.6e-86 322.8 282 57.8
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.4e-86 322.4 288 56.6
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 4.5e-86 322.0 277 55.6
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 7.7e-86 321.2 280 56.8
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.3e-85 320.5 284 57.4
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.3e-85 320.5 282 55.3
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 2.2e-85 319.7 287 57.5
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 2.9e-85 319.3 283 57.6
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 3.8e-85 318.9 295 52.9
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 5.0e-85 318.5 277 56.3
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 6.5e-85 318.2 282 56.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 8.5e-85 317.8 290 56.2
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 8.5e-85 317.8 282 56.7
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 8.5e-85 317.8 284 56.0
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 8.5e-85 317.8 282 55.3
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.4e-84 317.0 281 56.6
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.4e-84 317.0 281 56.2
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 2.5e-84 316.2 283 56.9
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 3.2e-84 315.8 281 56.6
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 3.2e-84 315.8 282 55.7
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 7.2e-84 314.7 280 55.0
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-83 313.5 290 55.9
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.6e-83 313.5 290 55.9
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.1e-83 313.2 288 55.9
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 4.7e-83 312.0 279 55.2
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 7.9e-83 311.2 293 51.9
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.0e-82 310.8 299 52.2
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.4e-82 310.5 279 55.6
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.8e-82 310.1 299 51.2
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.3e-82 309.7 299 54.5
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 3.0e-82 309.3 283 56.2
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 3.0e-82 309.3 291 55.7
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.9e-82 308.9 280 55.7
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.9e-82 308.9 280 55.7
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 5.1e-82 308.5 288 55.6
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 6.7e-82 308.1 284 55.3
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.5e-81 307.0 293 51.2
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 2.0e-81 306.6 282 52.8
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 3.3e-81 305.8 286 54.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 3.3e-81 305.8 279 54.8
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 7.4e-81 304.7 287 55.4
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 7.4e-81 304.7 279 55.2
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.3e-80 303.9 277 55.2
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 3.7e-80 302.4 282 53.5
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 8.2e-80 301.2 280 53.6
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.8e-79 300.1 286 54.9
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.1e-79 298.9 282 55.0
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 4.1e-79 298.9 277 54.9
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.1e-79 298.9 277 54.9
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.1e-79 298.9 277 54.9
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 2.9e-77 292.7 278 54.3
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 3.8e-77 292.4 281 55.9
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 2.5e-76 289.7 283 51.2
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 5.5e-76 288.5 280 53.6
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 1.2e-75 287.3 278 51.1
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.6e-75 287.0 284 52.1
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 2.1e-75 286.6 281 51.6
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 2.1e-75 286.6 278 52.9
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.7e-75 286.2 277 51.3
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 3.6e-75 285.8 282 51.8
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 1.7e-72 276.9 267 55.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.2e-72 276.6 218 62.8
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.8e-72 275.4 280 53.2
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 1.4e-71 273.9 206 62.1
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 1.3e-69 267.3 279 50.5
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 1.7e-69 266.9 279 50.9
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 4.2e-68 262.3 235 57.0
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 4.7e-67 258.8 298 47.3
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.1e-63 244.6 273 48.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-62 244.2 201 61.7
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.0e-62 243.4 209 57.9
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.5e-62 242.3 276 44.6
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.1e-55 219.5 265 44.2
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 4.1e-55 219.2 311 40.8
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 5.4e-55 218.8 298 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 2.5e-52 209.9 277 43.7
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 9.5e-52 208.0 203 50.2
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.6e-51 207.2 311 37.0
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 4.0e-50 202.6 280 40.0
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 5.7e-49 198.7 280 37.5
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 4.9e-48 195.7 285 41.1
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 8.3e-48 194.9 244 43.4
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 7.0e-47 191.8 199 49.2
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 7.0e-47 191.8 173 54.9
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 5.9e-46 188.7 286 39.9
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-44 183.3 277 38.3
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 9.5e-44 181.4 280 38.9
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 9.5e-44 181.4 280 38.9
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-43 180.6 280 38.9
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 1.6e-43 180.6 280 38.9
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 4.4e-41 172.6 168 50.0
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.7e-40 170.6 202 44.6
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 3.7e-40 169.5 270 38.5
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.3e-40 168.3 149 54.4
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.9e-39 167.2 285 36.8
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 2.4e-39 166.8 276 35.9
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.7e-38 163.3 183 49.2
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 3.3e-36 156.4 203 44.3
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 8.4e-24 115.2 143 44.8
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.2e-22 111.3 140 43.6
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.5e-22 109.8 193 34.7
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 3.6e-19 99.8 179 34.1
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.6e-19 99.8 112 44.6
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.8e-18 97.4 157 36.9
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.4e-18 97.1 80 60.0
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 8.9e-18 95.1 127 44.9
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.5e-17 94.4 155 38.1
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 3.4e-17 93.2 79 57.0
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 7.6e-17 92.0 102 46.1
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 3.8e-16 89.7 161 33.5
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 3.8e-16 89.7 161 33.5
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.8e-10 70.9 58 58.6
RcHm_v2.0_Chr4g0428261 Rosa chinensis HOM05D002759 ORTHO05D003290 4.2e-07 59.7 102 35.3


User provided reference genes

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