Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.0e-163 580.1 311 100.0
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 3.6e-145 518.5 281 95.4
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 6.2e-145 517.7 311 89.1
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.4e-141 505.8 311 89.4
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 7.1e-133 477.6 278 88.1
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 9.3e-133 477.2 274 88.3
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.6e-127 459.1 281 84.0
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 5.1e-123 444.9 277 80.5
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 1.1e-122 443.7 275 80.4
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 1.1e-122 443.7 273 80.2
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.5e-122 443.4 273 80.6
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 2.5e-122 442.6 277 79.1
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 3.3e-122 442.2 273 80.2
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 9.6e-122 440.7 273 79.9
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.6e-121 439.9 277 78.7
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 2.8e-121 439.1 277 79.1
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 2.8e-121 439.1 272 80.5
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.7e-121 438.7 273 78.0
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 1.1e-120 437.2 277 78.3
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 1.8e-120 436.4 278 78.4
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.8e-120 436.4 273 79.1
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 2.4e-120 436.0 273 78.8
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.4e-120 436.0 273 79.1
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 3.1e-120 435.6 273 79.1
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 4.0e-120 435.3 271 79.3
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 9.0e-120 434.1 277 78.7
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 9.0e-120 434.1 273 78.0
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 9.0e-120 434.1 271 78.6
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.0e-119 433.0 278 77.7
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 2.6e-119 432.6 278 78.4
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 4.5e-119 431.8 275 77.8
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 4.5e-119 431.8 272 80.1
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 7.6e-119 431.0 278 77.7
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 7.6e-119 431.0 302 73.2
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.3e-118 430.3 302 73.5
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 1.7e-118 429.9 272 79.8
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 1.7e-118 429.9 271 78.6
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 1.7e-118 429.9 279 77.4
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 2.2e-118 429.5 302 73.5
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.2e-118 429.5 302 73.5
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 2.9e-118 429.1 278 78.1
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 4.9e-118 428.3 302 73.2
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 8.4e-118 427.6 273 78.0
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 8.4e-118 427.6 273 78.4
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.1e-117 427.2 272 77.6
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 1.1e-117 427.2 271 77.5
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.9e-117 426.4 302 72.5
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 3.2e-117 425.6 271 76.0
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 7.1e-117 424.5 271 76.4
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 2.1e-116 422.9 277 74.7
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 2.7e-116 422.5 303 71.9
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 2.7e-116 422.5 303 71.9
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.0e-115 420.6 275 78.9
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.0e-115 420.6 275 78.9
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.0e-115 420.6 271 76.8
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 3.0e-115 419.1 276 75.7
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 3.9e-115 418.7 279 74.9
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 6.7e-115 417.9 278 75.5
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 8.7e-115 417.5 272 75.7
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.9e-114 416.4 271 77.5
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 2.5e-114 416.0 278 74.5
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 4.3e-114 415.2 278 74.5
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 7.4e-114 414.5 276 75.0
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 7.4e-114 414.5 278 74.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.3e-113 413.7 278 74.1
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 2.8e-113 412.5 305 69.8
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 4.8e-113 411.8 278 73.4
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 6.3e-113 411.4 278 73.7
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 6.3e-113 411.4 305 69.8
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 1.1e-112 410.6 305 69.8
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 1.1e-112 410.6 275 73.8
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 1.8e-112 409.8 285 76.1
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 9.0e-112 407.5 276 76.1
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 1.5e-111 406.8 271 74.5
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 3.4e-111 405.6 274 76.6
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 4.5e-111 405.2 277 72.2
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 4.5e-111 405.2 280 76.1
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 2.9e-110 402.5 278 73.7
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 8.5e-110 401.0 277 74.0
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 1.1e-109 400.6 317 65.6
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 1.9e-109 399.8 277 71.5
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 3.2e-109 399.1 277 73.3
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 5.5e-109 398.3 334 64.1
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 1.6e-108 396.7 276 74.3
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 4.6e-108 395.2 277 75.1
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 3.7e-105 385.6 280 70.7
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 3.7e-105 385.6 271 69.7
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 3.4e-103 379.0 277 70.8
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 7.7e-103 377.9 291 69.4
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 1.4e-101 373.6 305 65.9
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.3e-99 366.3 296 64.9
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 4.8e-97 358.6 277 66.4
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 5.3e-96 355.1 319 62.1
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 7.0e-96 354.8 313 61.0
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.1e-90 337.4 269 63.9
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 4.1e-88 328.9 269 61.7
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 2.0e-87 326.6 291 57.7
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 3.0e-83 312.8 204 77.5
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 5.2e-83 312.0 200 79.5
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 4.4e-82 308.9 199 75.4
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.2e-81 306.6 274 58.8
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 5.9e-79 298.5 202 75.7
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.4e-72 277.3 279 53.0
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 7.2e-69 265.0 227 62.6
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 3.4e-66 256.1 180 73.3
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.0e-62 244.6 262 48.9
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.2e-55 221.1 277 43.3
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 3.6e-52 209.5 153 72.5
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.1e-51 208.0 155 72.3
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 1.6e-47 194.1 319 37.3
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 6.6e-46 188.7 276 38.4
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 4.6e-39 166.0 215 41.9
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 1.3e-38 164.5 212 42.5
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 8.1e-36 155.2 182 50.5
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.6e-34 150.2 116 66.4
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.3e-27 125.9 207 37.2
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 9.0e-27 125.2 87 72.4
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 1.1e-19 101.7 74 64.9
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 7.6e-18 95.5 93 54.8
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 1.6e-15 87.8 135 42.2
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 6.0e-15 85.9 82 57.3
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 2.2e-09 67.4 79 51.9
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 3.2e-08 63.5 57 49.1


User provided reference genes

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