Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.3e-307 1058.9 548 100.0
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 4.3e-149 532.3 600 56.3
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 8.9e-147 524.6 525 58.9
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.1e-139 499.6 579 55.1
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 3.2e-136 489.6 513 57.3
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 2.1e-63 247.7 615 35.0
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 3.6e-63 246.9 604 35.8
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.4e-62 245.0 598 34.6
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 4.0e-62 243.4 604 35.4
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 8.9e-62 242.3 596 35.2
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 6.4e-60 236.1 576 36.5
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 1.4e-59 235.0 597 35.2
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 5.4e-59 233.0 656 35.1
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.7e-57 228.0 576 34.5
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-57 227.6 549 37.5
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-57 227.6 549 37.5
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 4.3e-56 223.4 545 35.8
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 4.3e-56 223.4 527 35.5
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 1.6e-55 221.5 598 34.6
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.0e-55 219.2 559 36.9
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 6.8e-54 216.1 565 34.2
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.0e-53 214.5 554 35.7
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 4.9e-52 209.9 560 33.9
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 8.3e-52 209.1 595 32.9
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 7.0e-51 206.1 586 34.0
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 3.0e-49 200.7 519 34.9
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 9.5e-48 195.7 554 34.5
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 3.6e-47 193.7 605 30.9
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 1.1e-46 192.2 603 32.5
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 1.1e-46 192.2 493 34.3
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.8e-46 191.4 607 32.0
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 2.3e-46 191.0 605 32.6
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 3.1e-46 190.7 643 31.7
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 2.2e-44 184.5 567 31.0
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.1e-43 182.2 517 35.0
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 1.1e-43 182.2 581 32.9
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 9.2e-43 179.1 592 31.8
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 9.2e-43 179.1 545 33.0
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 7.8e-42 176.0 562 32.2
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.0e-41 175.6 410 35.4
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 1.3e-41 175.3 582 31.1
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 1.7e-41 174.9 620 32.1
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 2.3e-41 174.5 607 33.1
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 3.9e-41 173.7 416 33.9
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 3.9e-41 173.7 596 30.5
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 3.9e-41 173.7 604 32.3
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.1e-40 172.2 529 32.7
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 9.5e-40 169.1 542 33.8
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 1.2e-39 168.7 443 34.8
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 2.8e-39 167.5 616 31.3
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 3.6e-39 167.2 443 34.5
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 4.7e-39 166.8 544 30.5
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 8.1e-39 166.0 565 30.3
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 8.1e-39 166.0 574 32.9
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 2.3e-38 164.5 547 32.2
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.3e-38 164.5 571 31.7
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 5.2e-38 163.3 541 32.7
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 1.5e-37 161.8 580 33.3
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 3.4e-37 160.6 396 33.8
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 5.8e-37 159.8 585 31.1
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 1.7e-36 158.3 580 31.9
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 2.2e-36 157.9 614 31.3
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.9e-36 157.5 569 32.3
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 6.4e-36 156.4 539 32.8
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 1.4e-35 155.2 594 31.5
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 3.2e-35 154.1 418 32.8
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 3.5e-34 150.6 569 29.5
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 6.0e-34 149.8 479 33.8
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 1.0e-33 149.1 349 35.5
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 3.0e-33 147.5 385 33.5
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 5.1e-33 146.7 496 32.3
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 1.6e-31 141.7 573 29.8
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 3.6e-31 140.6 600 28.5
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 6.2e-31 139.8 488 31.6
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 8.1e-31 139.4 376 33.0
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 1.4e-30 138.7 540 30.2
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 1.5e-29 135.2 406 31.5
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 4.4e-29 133.7 500 30.4
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 3.8e-28 130.6 617 30.0
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.9e-27 128.3 496 31.7
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 4.2e-27 127.1 335 32.5
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.1e-26 124.8 465 29.5
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 2.1e-26 124.8 396 32.6
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 2.7e-26 124.4 368 32.1
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 3.9e-25 120.6 451 30.2
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.9e-24 118.2 492 29.3
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 7.3e-24 116.3 448 31.0
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 9.6e-24 115.9 456 29.2
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 9.6e-24 115.9 452 31.4
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 4.8e-23 113.6 621 27.7
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.4e-22 111.3 609 26.9
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 9.0e-22 109.4 583 26.1
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 7.6e-21 106.3 606 27.6
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 1.2e-18 99.0 498 28.3
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 4.3e-16 90.5 143 37.8
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 3.6e-15 87.4 407 29.2
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 4.8e-15 87.0 411 26.8
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 1.1e-14 85.9 378 28.6
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 2.4e-14 84.7 380 28.4
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 3.1e-14 84.3 365 28.5
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 4.2e-11 73.9 363 28.9
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.2e-10 72.4 210 33.3
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 2.1e-10 71.6 339 26.8
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 2.7e-10 71.2 367 28.3
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.5e-08 64.7 173 43.4
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 3.3e-08 64.3 292 28.8


User provided reference genes

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