Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.7e-143 512.7 259 100.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.0e-76 289.3 324 53.1
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 6.7e-68 261.5 298 50.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.8e-60 236.9 223 56.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.4e-57 226.5 257 49.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.2e-56 224.2 258 48.1
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.0e-56 223.4 281 47.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.6e-56 223.0 278 46.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.4e-56 222.6 257 48.2
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.4e-56 222.6 260 48.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.7e-56 221.5 260 50.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.3e-55 220.7 290 44.1
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.3e-55 220.7 258 49.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.7e-55 220.3 308 42.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.5e-55 218.4 261 47.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 6.5e-55 218.4 303 43.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.2e-54 216.1 304 42.8
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 4.2e-54 215.7 257 47.5
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 4.2e-54 215.7 303 43.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.5e-54 215.3 250 48.4
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 7.2e-54 214.9 298 44.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 7.2e-54 214.9 269 46.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.7e-53 213.0 275 44.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.6e-53 212.2 261 46.7
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.0e-52 211.1 258 47.3
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.4e-52 210.7 258 46.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-52 210.3 261 46.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.0e-52 209.5 316 40.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-52 209.5 257 46.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.7e-52 208.4 259 46.3
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 6.7e-52 208.4 257 46.7
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 8.8e-52 208.0 302 43.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.5e-51 207.2 302 43.7
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.0e-51 206.8 259 47.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.3e-51 206.1 275 44.7
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.3e-50 204.1 259 45.6
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.3e-50 204.1 268 44.0
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.2e-50 203.4 258 45.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.2e-50 203.4 223 52.0
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.2e-50 203.4 260 44.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.8e-50 203.0 225 50.7
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.7e-50 202.6 311 42.8
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 3.7e-50 202.6 263 45.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.8e-50 202.2 302 40.7
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 6.3e-50 201.8 285 44.6
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 6.3e-50 201.8 257 46.7
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 8.2e-50 201.4 311 39.9
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.4e-49 200.7 297 42.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.4e-49 200.7 316 40.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.4e-49 200.7 257 46.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.4e-49 199.9 311 41.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.4e-49 199.9 257 42.8
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.4e-49 199.9 238 48.3
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 4.1e-49 199.1 312 39.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 5.3e-49 198.7 309 39.8
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 6.9e-49 198.4 307 40.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.9e-49 198.4 223 49.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 9.1e-49 198.0 251 47.0
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.2e-48 197.6 304 42.1
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.2e-48 197.6 303 40.6
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.5e-48 197.2 256 44.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.0e-48 196.8 223 49.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.0e-48 196.8 272 42.3
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.4e-48 196.1 295 41.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.0e-47 194.5 260 42.7
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.3e-47 194.1 275 42.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.7e-47 193.7 262 45.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 6.5e-47 191.8 266 40.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 4.2e-46 189.1 200 52.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.2e-46 189.1 279 40.9
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.6e-45 187.2 255 43.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.1e-45 186.8 296 40.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 4.7e-45 185.7 288 40.3
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.7e-45 185.7 288 40.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.7e-45 185.7 312 41.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.8e-44 183.7 310 37.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.3e-44 183.3 375 35.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.3e-44 183.3 396 35.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.0e-44 183.0 328 36.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.7e-44 181.8 293 38.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.1e-43 181.0 263 39.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.1e-43 181.0 119 73.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.6e-43 179.9 220 44.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-43 179.1 271 42.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.4e-43 179.1 265 41.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 4.4e-43 179.1 308 36.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 5.7e-43 178.7 223 46.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.4e-43 178.3 307 37.1
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.4e-43 178.3 303 37.6
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.7e-43 177.9 155 59.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 9.7e-43 177.9 275 39.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.7e-42 177.2 265 40.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.8e-42 176.4 309 36.6
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.8e-42 176.4 155 60.0
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.7e-42 176.0 286 40.2
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.3e-42 175.3 310 35.5
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 8.2e-42 174.9 304 37.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-41 174.5 299 37.5
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.4e-41 174.1 297 37.7
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-41 173.3 272 40.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.1e-41 172.9 311 35.7
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 3.1e-41 172.9 260 39.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 4.1e-41 172.6 294 37.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 4.1e-41 172.6 225 47.6
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-40 170.2 292 37.3
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.0e-40 170.2 259 39.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 7.7e-40 168.3 259 39.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-39 167.5 281 37.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-39 167.2 282 37.2
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.2e-39 166.8 282 37.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-39 166.4 224 42.9
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 6.5e-39 165.2 307 34.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 8.5e-39 164.9 142 62.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-38 164.5 272 37.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-38 164.1 273 37.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-38 163.7 297 36.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-38 163.7 297 36.4
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-38 163.7 302 36.4
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.2e-38 162.9 223 40.8
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.2e-38 162.5 259 40.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-37 160.6 394 33.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-36 156.4 149 57.7
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 6.7e-36 155.2 130 59.2
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.8e-36 154.8 280 35.7
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.5e-35 154.1 253 36.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.0e-35 153.7 273 34.4
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 7.4e-35 151.8 217 41.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.3e-34 151.0 127 57.5
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.7e-34 149.4 192 43.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 4.8e-34 149.1 263 36.9
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.5e-32 142.9 177 45.2
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.6e-29 132.9 218 39.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.6e-29 132.9 202 39.6
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-29 131.7 207 40.1
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.0e-28 131.3 207 40.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.8e-28 130.6 207 39.6
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 3.0e-28 129.8 207 40.1
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-28 128.6 151 47.7
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-27 125.9 207 39.6
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.4e-27 125.9 218 39.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.8e-26 123.2 210 39.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.3e-26 121.7 207 38.6
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.0e-24 117.1 249 35.7
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.7e-24 116.7 216 35.6
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-22 110.2 232 34.1
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.7e-21 105.9 245 31.4
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.8e-17 94.0 101 48.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.2e-16 91.3 101 46.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.9e-15 86.7 235 31.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.9e-15 86.7 127 35.4
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.5e-14 84.3 91 52.7
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.6e-13 79.7 143 36.4
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.1e-09 66.2 86 47.7
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.1e-09 66.2 131 35.1
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.2e-08 64.7 134 33.6
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.9e-08 62.4 49 57.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.5e-06 57.8 49 57.1
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 3.3e-06 56.6 69 42.0


User provided reference genes

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