Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 2.2e-112 409.1 220 100.0
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 2.6e-28 129.8 265 35.8
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 9.2e-26 121.3 263 34.6
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.0e-24 117.9 125 50.4
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 3.8e-24 115.9 267 34.5
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.2e-19 100.1 111 45.9
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.2e-19 100.1 96 46.9
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 3.7e-19 99.4 96 46.9
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.7e-19 99.4 96 46.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 3.7e-19 99.4 101 47.5
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.3e-19 98.2 96 45.8
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.1e-18 97.8 103 48.5
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 5.4e-18 95.5 123 41.5
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.4e-18 95.5 111 45.9
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 7.0e-18 95.1 219 34.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 2.0e-17 93.6 107 46.7
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 3.5e-17 92.8 105 46.7
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 4.6e-17 92.4 117 40.2
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 7.8e-17 91.7 121 39.7
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.7e-16 90.5 113 44.2
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 2.3e-16 90.1 139 36.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.0e-16 89.7 117 41.0
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 5.0e-16 89.0 103 45.6
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.0e-16 89.0 104 43.3
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 1.5e-15 87.4 108 45.4
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.9e-15 87.0 113 39.8
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.9e-15 87.0 123 42.3
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.9e-15 87.0 90 46.7
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.3e-15 86.3 108 38.9
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.6e-14 84.0 100 38.0
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 3.6e-14 82.8 102 39.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.6e-14 82.8 110 40.9
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 4.7e-14 82.4 108 38.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 8.0e-14 81.6 146 31.5
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 8.0e-14 81.6 111 36.9
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.0e-13 81.3 108 38.0
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.0e-13 81.3 108 38.0
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.3e-13 80.1 105 39.0
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 4.0e-13 79.3 87 48.3
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 5.2e-13 79.0 100 38.0
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.2e-12 77.8 108 38.0
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.2e-12 77.8 70 57.1
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.2e-12 77.8 133 33.1
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 1.5e-12 77.4 62 58.1
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.0e-12 77.0 128 32.0
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.6e-12 76.6 83 48.2
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 3.4e-12 76.3 106 41.5
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.4e-12 75.9 93 39.8
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 7.5e-12 75.1 106 41.5
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.3e-11 74.3 70 51.4
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.7e-11 73.9 69 50.7
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.2e-11 73.6 186 29.0
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.2e-11 73.6 98 48.0
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.2e-11 73.6 98 48.0
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 2.2e-11 73.6 77 45.5
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 2.9e-11 73.2 70 51.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 3.7e-11 72.8 92 40.2
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 4.9e-11 72.4 49 63.3
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 8.3e-11 71.6 48 60.4
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.4e-10 70.9 136 29.4
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 1.4e-10 70.9 106 39.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.9e-10 70.5 73 41.1
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.9e-10 70.5 89 42.7
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.9e-10 70.5 167 29.9
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 2.4e-10 70.1 94 41.5
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.4e-10 70.1 49 57.1
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.2e-10 69.7 93 39.8
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 4.1e-10 69.3 110 37.3
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 4.1e-10 69.3 48 56.2
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 4.1e-10 69.3 48 56.2
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 7.0e-10 68.6 93 39.8
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 7.0e-10 68.6 60 53.3
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 9.2e-10 68.2 60 48.3
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 9.2e-10 68.2 70 41.4
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 9.2e-10 68.2 62 53.2
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.2e-09 67.8 73 38.4
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.6e-09 67.4 100 40.0
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 2.0e-09 67.0 93 43.0
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.7e-09 66.6 85 42.4
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.5e-09 66.2 100 36.0
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 4.6e-09 65.9 82 37.8
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 4.6e-09 65.9 123 35.0
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 6.0e-09 65.5 105 38.1
PSO782G3336 Papaver somniferum HOM05D003520 ORTHO05D003332 6.0e-09 65.5 99 39.4
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 6.0e-09 65.5 99 39.4
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 7.8e-09 65.1 50 52.0
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 7.8e-09 65.1 99 37.4
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.0e-08 64.7 62 43.5
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.0e-08 64.7 49 46.9
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.0e-08 64.7 135 31.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 1.0e-08 64.7 104 35.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.3e-08 64.3 95 38.9
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 2.3e-08 63.5 74 37.8
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.3e-08 63.5 101 39.6
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.0e-08 63.2 99 36.4
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 3.0e-08 63.2 99 38.4
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 3.9e-08 62.8 105 37.1
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.0e-08 62.4 99 36.4
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 5.0e-08 62.4 53 47.2
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.6e-08 62.0 46 52.2
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.6e-08 61.6 85 36.5
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 8.6e-08 61.6 99 40.4
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.5e-07 60.8 61 45.9
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.9e-07 60.5 254 24.4
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.9e-07 60.5 93 37.6
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 4.3e-07 59.3 102 34.3
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 4.3e-07 59.3 94 36.2
EL10Ac2g03257 Beta vulgaris HOM05D007284 ORTHO05D009303 5.6e-07 58.9 152 30.3
Nn7g38251 Nelumbo nucifera HOM05D007284 ORTHO05D009303 5.6e-07 58.9 155 29.0
TAR626G1605 Trochodendron aralioides HOM05D007284 ORTHO05D009303 9.5e-07 58.2 155 29.0
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.2e-06 57.8 50 50.0
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.2e-06 57.8 52 48.1
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.2e-06 57.8 61 45.9
Cc05_g16380 Coffea canephora HOM05D007284 ORTHO05D009303 1.6e-06 57.4 164 28.0
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 1.6e-06 57.4 151 30.5
Oeu027719.1 Olea europaea HOM05D007284 ORTHO05D009303 2.1e-06 57.0 152 29.6
GSVIVG01036771001 Vitis vinifera HOM05D007284 ORTHO05D009303 2.1e-06 57.0 152 29.6
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.8e-06 56.6 99 31.3
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 2.8e-06 56.6 76 44.7
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.8e-06 56.6 51 45.1
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 2.8e-06 56.6 51 43.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.8e-06 56.6 80 37.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.6e-06 56.2 92 38.0
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.6e-06 56.2 74 35.1
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 3.6e-06 56.2 94 37.2
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.7e-06 55.8 88 36.4
DCAR_016839 Daucus carota HOM05D007284 ORTHO05D009303 4.7e-06 55.8 166 28.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 4.7e-06 55.8 74 41.9
Migut.M01528 Erythranthe guttata HOM05D007284 ORTHO05D009303 4.7e-06 55.8 152 28.9
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.7e-06 55.8 94 37.2
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.7e-06 55.8 96 35.4
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 4.7e-06 55.8 72 34.7
vmacro11697 Vaccinium macrocarpon HOM05D007284 ORTHO05D009303 4.7e-06 55.8 152 28.9
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.2e-06 55.5 49 46.9
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 6.2e-06 55.5 169 27.2
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.2e-06 55.5 74 39.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 6.2e-06 55.5 101 33.7
CSS0030417 Camellia sinensis var. sinensis HOM05D007284 ORTHO05D009303 8.1e-06 55.1 152 28.3
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.1e-06 55.1 101 35.6
AUR62036984 Chenopodium quinoa HOM05D007284 ORTHO05D009303 8.1e-06 55.1 156 29.5
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 8.1e-06 55.1 68 42.6
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 8.1e-06 55.1 100 34.0
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 8.1e-06 55.1 92 38.0
Phvul.005G030300 Phaseolus vulgaris HOM05D007284 ORTHO05D009303 8.1e-06 55.1 169 26.0
Sc20g0004040 Simmondsia chinensis HOM05D007284 ORTHO05D009303 8.1e-06 55.1 153 28.1


User provided reference genes

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