Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 5.0e-239 830.9 474 100.0
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 3.4e-187 658.7 480 72.3
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.3e-183 646.0 474 73.4
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.6e-176 623.2 487 69.4
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.2e-169 599.0 474 69.2
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.9e-145 520.0 477 59.5
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 7.2e-145 518.1 477 59.3
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 8.0e-144 514.6 473 59.8
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 4.0e-143 512.3 473 60.7
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 6.8e-143 511.5 476 58.2
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.5e-142 510.4 481 57.8
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.7e-141 506.9 473 58.1
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 3.7e-141 505.8 483 56.7
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 4.9e-141 505.4 473 57.7
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 7.0e-140 501.5 466 56.2
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 3.5e-139 499.2 471 57.3
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.3e-138 497.3 478 57.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.3e-138 497.3 476 58.0
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 1.7e-138 496.9 504 55.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 1.7e-138 496.9 474 57.0
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 3.8e-138 495.7 466 58.4
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.5e-137 493.8 471 56.9
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.5e-137 493.0 486 56.2
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 3.3e-137 492.7 469 57.6
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 7.3e-137 491.5 476 56.5
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 7.3e-137 491.5 476 56.5
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 9.5e-137 491.1 477 57.9
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 9.5e-137 491.1 472 56.6
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.6e-136 490.3 472 56.1
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 2.8e-136 489.6 469 56.5
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 2.8e-136 489.6 472 57.2
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 3.6e-136 489.2 482 56.0
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.0e-135 487.6 472 56.4
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.0e-135 487.6 475 56.8
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 1.4e-135 487.3 471 57.5
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 3.0e-135 486.1 478 55.6
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.8e-135 485.0 470 57.4
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.2e-134 484.2 472 55.7
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.4e-134 482.6 476 57.1
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.4e-134 482.6 466 54.7
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.4e-134 482.6 507 53.3
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 4.4e-134 482.3 467 57.0
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 5.7e-134 481.9 466 55.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.7e-133 480.3 476 56.7
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.2e-133 479.9 506 53.4
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 2.9e-133 479.6 433 58.4
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 4.9e-133 478.8 475 56.2
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.4e-132 477.2 466 54.9
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 1.8e-132 476.9 466 54.5
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 2.4e-132 476.5 466 54.7
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 3.2e-132 476.1 470 56.0
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 4.1e-132 475.7 468 56.0
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 7.0e-132 474.9 466 54.9
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.2e-131 474.2 470 53.8
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 2.7e-131 473.0 469 56.3
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 5.9e-131 471.9 465 55.5
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 2.3e-130 469.9 468 53.4
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 3.0e-130 469.5 468 53.2
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 3.9e-130 469.2 467 54.0
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 5.0e-130 468.8 476 55.5
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 6.6e-130 468.4 499 53.5
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 8.6e-130 468.0 493 53.8
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.1e-129 467.6 468 53.4
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.1e-129 467.6 475 54.5
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.5e-129 467.2 475 54.5
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 3.3e-129 466.1 468 53.4
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 2.1e-128 463.4 481 54.9
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.1e-128 463.4 474 53.2
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 4.7e-128 462.2 482 53.3
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 1.4e-127 460.7 474 52.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 4.0e-127 459.1 474 52.5
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 7.5e-126 454.9 467 54.2
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 3.2e-124 449.5 465 52.3
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 7.0e-124 448.4 465 51.6
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 9.2e-124 448.0 493 53.8
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 3.5e-123 446.0 425 56.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.7e-122 443.7 468 53.0
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 4.3e-121 439.1 467 50.1
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.6e-120 436.0 476 54.8
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.8e-119 433.7 476 55.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 4.0e-119 432.6 472 51.3
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.5e-118 430.6 487 51.1
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 5.4e-116 422.2 467 54.6
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.2e-115 421.0 442 55.4
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.6e-115 420.6 423 54.4
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 3.5e-115 419.5 476 50.8
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 8.6e-114 414.8 431 53.6
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.1e-113 414.5 492 47.0
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 8.1e-112 408.3 466 47.9
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 3.4e-110 402.9 473 48.4
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 4.6e-107 392.5 378 56.1
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 6.2e-104 382.1 392 52.8
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 4.9e-101 372.5 320 60.6
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.1e-100 371.3 321 62.3
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 3.5e-99 366.3 487 41.9
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 7.3e-97 358.6 465 46.2
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.1e-95 354.8 314 59.6
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 8.7e-90 335.1 375 52.5
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.5e-86 324.3 520 43.1
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 3.2e-84 316.6 321 53.3
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 5.1e-82 309.3 351 49.6
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 9.0e-79 298.5 315 54.0
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.2e-75 288.1 331 50.5
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 6.7e-74 282.3 313 52.4
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.8e-72 276.9 495 36.8
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.7e-69 267.7 370 43.2
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 3.3e-65 253.4 265 53.6
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 3.8e-61 240.0 219 58.0
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 4.2e-60 236.5 439 35.5
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 3.6e-51 206.8 345 38.8
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.5e-44 184.9 497 29.2
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 5.2e-34 149.8 129 62.8
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 5.2e-34 149.8 493 28.6
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 4.5e-30 136.7 503 29.6
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.2e-25 122.1 119 58.0
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 2.8e-24 117.5 133 51.1
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 3.1e-23 114.0 193 38.9
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 5.4e-23 113.2 83 66.3
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-19 102.1 416 24.0
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 2.8e-19 100.9 100 52.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 1.1e-15 89.0 102 50.0
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 2.4e-15 87.8 322 27.6
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 5.4e-15 86.7 62 67.7
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 5.4e-15 86.7 403 27.0
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 4.6e-14 83.6 62 64.5
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 2.3e-13 81.3 62 61.3
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.1e-07 62.4 61 52.5
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.7e-06 57.8 61 49.2
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 6.0e-06 56.6 59 57.6


User provided reference genes

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