Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35523 Actinidia chinensis HOM05D006888 ORTHO05D008371 1.4e-110 404.4 202 100.0
CSS0014440 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 1.5e-67 261.5 228 62.7
CSS0050387 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 7.8e-64 249.2 231 61.0
Hma1.2p1_0472F.1_g160001 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 3.6e-61 240.4 226 58.4
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 9.9e-51 205.7 225 49.8
Lj5A334T57 Lonicera japonica HOM05D006888 ORTHO05D008371 2.5e-46 191.0 202 52.0
TAR362G0873 Trochodendron aralioides HOM05D006888 ORTHO05D008371 1.1e-44 185.7 191 52.9
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.5e-43 181.8 198 49.5
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 4.4e-43 180.3 196 49.5
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 5.8e-43 179.9 198 49.0
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 4.2e-41 173.7 192 44.8
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 1.2e-40 172.2 180 47.8
PGSC0003DMG400002802 Solanum tuberosum HOM05D006888 ORTHO05D008371 1.2e-40 172.2 210 48.1
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 2.7e-40 171.0 204 46.6
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 4.6e-40 170.2 204 46.1
HanXRQChr02g0059161 Helianthus annuus HOM05D006888 ORTHO05D008371 7.8e-40 169.5 182 47.8
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 1.0e-39 169.1 176 49.4
Solyc01g100450.1 Solanum lycopersicum HOM05D006888 ORTHO05D008371 1.3e-39 168.7 210 47.6
CAN.G1715.1 Capsicum annuum HOM05D006888 ORTHO05D008371 2.5e-38 164.5 200 47.5
Sopen01g043970 Solanum pennellii HOM05D006888 ORTHO05D008371 2.5e-38 164.5 224 45.1
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 4.3e-38 163.7 206 44.7
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 5.6e-38 163.3 196 46.4
Gohir.A11G273300 Gossypium hirsutum HOM05D006888 ORTHO05D008371 5.6e-38 163.3 176 49.4
Gorai.007G306300 Gossypium raimondii HOM05D006888 ORTHO05D008371 9.6e-38 162.5 176 48.3
Nitab4.5_0000368g0090 Nicotiana tabacum HOM05D006888 ORTHO05D008371 1.6e-37 161.8 222 44.1
MD02G1110600 Malus domestica HOM05D006888 ORTHO05D008371 2.8e-37 161.0 196 45.9
Gohir.D11G283400 Gossypium hirsutum HOM05D006888 ORTHO05D008371 3.6e-37 160.6 176 47.7
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 8.1e-37 159.5 192 45.8
Manes.03G083400 Manihot esculenta HOM05D006888 ORTHO05D008371 1.4e-36 158.7 173 49.1
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 3.4e-35 154.1 190 45.3
Aa31LG1G5110 Aethionema arabicum HOM05D006888 ORTHO05D008371 7.6e-35 152.9 215 39.5
CANSAT54G0476 Cannabis sativa HOM05D006888 ORTHO05D008371 7.6e-35 152.9 187 44.4
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 1.3e-34 152.1 194 44.3
THA.LOC104820294 Tarenaya hassleriana HOM05D006888 ORTHO05D008371 4.9e-34 150.2 199 44.7
TPR.G21561 Trifolium pratense HOM05D006888 ORTHO05D008371 1.1e-33 149.1 182 44.0
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 1.9e-33 148.3 167 46.7
Oeu064824.1 Olea europaea HOM05D006888 ORTHO05D008371 2.4e-33 147.9 178 46.1
CiPaw.08G155700 Carya illinoinensis HOM05D006888 ORTHO05D008371 3.2e-33 147.5 198 41.9
RcHm_v2.0_Chr2g0099761 Rosa chinensis HOM05D006888 ORTHO05D008371 3.2e-33 147.5 196 42.3
Medtr4g108060 Medicago truncatula HOM05D006888 ORTHO05D008371 5.4e-33 146.7 180 44.4
Potri.005G014500 Populus trichocarpa HOM05D006888 ORTHO05D008371 5.4e-33 146.7 217 40.6
Lj3g0005449 Lotus japonicus HOM05D006888 ORTHO05D008371 9.3e-33 146.0 183 43.2
TWI56G0663 Tripterygium wilfordii HOM05D006888 ORTHO05D008371 9.3e-33 146.0 198 42.9
Aqoxy3G04232 Aquilegia oxysepala HOM05D006888 ORTHO05D008371 2.1e-32 144.8 188 44.7
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.7e-32 144.4 169 44.4
Peaxi162Scf00673g00033 Petunia axillaris HOM05D006888 ORTHO05D008371 2.7e-32 144.4 185 43.8
Medtr4g074390 Medicago truncatula HOM05D006888 ORTHO05D008371 4.6e-32 143.7 180 43.3
Hma1.2p1_0052F.1_g030800 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 6.0e-32 143.3 125 58.4
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 7.9e-32 142.9 194 41.8
Ca_03033_v3 Cicer arietinum L. HOM05D006888 ORTHO05D008371 1.0e-31 142.5 184 43.5
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 1.8e-31 141.7 174 44.3
Glyma.11G103200 Glycine max HOM05D006888 ORTHO05D008371 2.3e-31 141.4 185 41.6
Phvul.002G058500 Phaseolus vulgaris HOM05D006888 ORTHO05D008371 2.3e-31 141.4 178 41.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.9e-31 140.6 185 41.1
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 6.7e-31 139.8 194 41.2
Ciclev10003346m.g Citrus clementina HOM05D006888 ORTHO05D008371 8.7e-31 139.4 205 41.5
Psat5g177360 Pisum sativum HOM05D006888 ORTHO05D008371 8.7e-31 139.4 170 45.3
Psat5g190440 Pisum sativum HOM05D006888 ORTHO05D008371 8.7e-31 139.4 185 42.2
arahy.Tifrunner.gnm1.ann1.8HC1KC Arachis hypogaea HOM05D006888 ORTHO05D008371 1.9e-30 138.3 181 40.9
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 1.9e-30 138.3 204 40.7
VMungo1215G1495 Vigna mungo HOM05D006888 ORTHO05D008371 4.3e-30 137.1 180 40.0
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 7.4e-30 136.3 198 40.4
arahy.Tifrunner.gnm1.ann1.8QK61L Arachis hypogaea HOM05D006888 ORTHO05D008371 1.3e-29 135.6 181 40.3
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 1.6e-29 135.2 199 40.2
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 2.8e-29 134.4 198 38.4
FvH4_1g12100 Fragaria vesca HOM05D006888 ORTHO05D008371 2.8e-29 134.4 201 38.3
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 2.8e-29 134.4 181 40.3
FAN19G1999 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.7e-29 134.0 201 38.3
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 4.8e-29 133.7 178 42.1
SGA_v2.0_scaffold5G02782 Striga asiatica HOM05D006888 ORTHO05D008371 6.2e-29 133.3 178 42.1
FAN19G0192 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.4e-28 132.1 202 37.6
FAN28G0085 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.4e-28 132.1 202 37.6
FAN23G2816 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.4e-28 131.3 202 37.6
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 3.1e-28 131.0 197 40.1
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 3.1e-28 131.0 179 40.2
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 5.3e-28 130.2 198 38.9
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 6.9e-28 129.8 179 40.2
Migut.K00794 Erythranthe guttata HOM05D006888 ORTHO05D008371 9.0e-28 129.4 178 39.3
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.0e-27 128.3 223 36.8
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 1.3e-26 125.6 197 39.6
FAN26G0552 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.9e-26 124.4 202 36.6
SalBow3G0195 Salvia bowleyana HOM05D006888 ORTHO05D008371 4.9e-26 123.6 178 39.3
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 3.2e-25 120.9 199 37.2
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.1e-24 118.2 199 36.2
ClCG00G002450 Citrullus lanatus HOM05D006888 ORTHO05D008371 4.6e-24 117.1 165 42.4
vmacro01561 Vaccinium macrocarpon HOM05D006888 ORTHO05D008371 4.6e-24 117.1 73 76.7
Atru.BG.136.p Acer truncatum HOM05D006888 ORTHO05D008371 1.8e-23 115.2 125 51.2
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 1.5e-22 112.1 155 42.6
Psat5g190520 Pisum sativum HOM05D006888 ORTHO05D008371 1.6e-21 108.6 182 36.8
PGR083G0380 Punica granatum HOM05D006888 ORTHO05D008371 1.4e-20 105.5 139 43.9
Dinv24442 Davidia involucrata HOM05D006888 ORTHO05D008371 6.9e-20 103.2 69 69.6
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 1.0e-18 99.4 130 42.3
Hma1.2p1_0472F.1_g160010 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 5.0e-18 97.1 63 69.8
Hma1.2p1_0472F.1_g160023 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 5.0e-18 97.1 63 69.8
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 1.1e-17 95.9 130 42.3
DCAR_005421 Daucus carota HOM05D006888 ORTHO05D008371 9.3e-17 92.8 63 65.1
Nitab4.5_0004873g0030 Nicotiana tabacum HOM05D006888 ORTHO05D008371 2.7e-16 91.3 63 66.7
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 3.5e-16 90.9 89 50.6
Cc02_g35010 Coffea canephora HOM05D006888 ORTHO05D008371 3.0e-15 87.8 63 63.5
HPP92_008224 Vanilla planifolia HOM05D006888 ORTHO05D008371 5.1e-15 87.0 148 36.5
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 6.7e-15 86.7 172 33.7
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 1.5e-14 85.5 70 54.3
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 9.7e-14 82.8 146 34.2
Thecc.05G322900 Theobroma cacao HOM05D006888 ORTHO05D008371 9.7e-14 82.8 63 61.9
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 1.3e-13 82.4 71 50.7
Psat7g173680 Pisum sativum HOM05D006888 ORTHO05D008371 1.3e-13 82.4 126 38.1
Sabra05G0011500 Salix brachista HOM05D006888 ORTHO05D008371 2.8e-13 81.3 64 62.5
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 2.8e-13 81.3 195 28.7
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 3.7e-13 80.9 165 33.3
Lalb_Chr05g0225641 Lupinus albus HOM05D006888 ORTHO05D008371 1.4e-12 79.0 139 35.3
Thecc.05G322800 Theobroma cacao HOM05D006888 ORTHO05D008371 1.5e-11 75.5 90 42.2
Eucgr.A00652 Eucalyptus grandis HOM05D006888 ORTHO05D008371 2.6e-11 74.7 63 55.6
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 1.1e-06 59.3 172 26.7
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 2.5e-06 58.2 170 27.1
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 4.3e-06 57.4 183 21.9
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 4.3e-06 57.4 165 21.8


User provided reference genes

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