Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.6e-266 921.0 462 100.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.1e-201 706.8 439 82.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.2e-198 694.9 435 81.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.2e-194 682.6 438 79.7
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.1e-193 680.2 436 81.9
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.5e-192 674.9 435 78.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 5.9e-192 674.5 442 76.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-191 673.3 433 78.8
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 8.5e-191 670.6 437 77.8
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 5.5e-190 667.9 435 78.6
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 5.5e-190 667.9 435 78.4
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 1.2e-189 666.8 433 76.2
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.6e-189 666.4 430 78.4
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.6e-189 666.4 442 77.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 6.1e-189 664.5 445 75.7
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 8.8e-188 660.6 433 77.6
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.1e-187 660.2 442 76.9
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 7.5e-187 657.5 429 78.6
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 9.7e-187 657.1 435 76.1
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.3e-186 656.8 423 77.5
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.7e-186 656.4 431 75.2
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 8.2e-186 654.1 433 76.4
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.2e-186 654.1 439 76.5
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.2e-186 654.1 429 76.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.4e-185 653.3 435 75.4
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.8e-185 652.9 439 75.9
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 3.1e-185 652.1 434 77.2
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 4.1e-185 651.7 430 77.9
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 9.1e-185 650.6 426 77.2
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 9.1e-185 650.6 438 75.8
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.6e-184 649.8 433 77.1
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-184 649.8 430 76.5
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.0e-184 649.4 435 75.2
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 2.0e-184 649.4 430 76.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.7e-184 649.0 427 75.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.5e-184 648.7 437 76.0
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.5e-184 648.7 435 75.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.5e-184 648.7 430 76.0
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.5e-184 648.3 429 76.9
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.5e-184 648.3 458 73.6
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 5.9e-184 647.9 427 77.3
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.0e-183 647.1 431 74.9
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.0e-183 647.1 445 75.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.7e-183 646.4 388 81.7
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.2e-183 646.0 432 76.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-183 646.0 430 76.0
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.2e-183 646.0 437 76.4
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 3.8e-183 645.2 437 75.5
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 8.5e-183 644.0 435 74.9
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 8.5e-183 644.0 434 75.1
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.5e-182 643.3 426 75.8
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.5e-182 643.3 426 75.8
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.5e-182 642.5 453 72.2
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.5e-182 642.5 428 75.7
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.5e-182 642.5 439 74.3
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.5e-182 642.5 439 74.0
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.5e-182 642.5 439 74.0
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 3.2e-182 642.1 426 76.5
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.6e-181 639.8 436 74.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 2.7e-181 639.0 400 77.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.7e-181 639.0 431 75.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 3.6e-181 638.6 430 75.3
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.6e-181 638.6 425 77.2
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.6e-181 638.6 429 76.2
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.6e-181 638.6 429 76.2
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 4.7e-181 638.3 444 74.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.7e-181 638.3 418 76.3
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 6.1e-181 637.9 430 75.8
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 8.0e-181 637.5 425 77.2
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 8.0e-181 637.5 425 75.1
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 1.0e-180 637.1 423 74.7
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.3e-180 636.0 428 75.0
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.3e-180 636.0 428 75.0
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.3e-180 636.0 428 75.0
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 2.3e-180 636.0 435 74.5
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.3e-180 636.0 430 74.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 3.0e-180 635.6 428 75.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.0e-180 635.6 428 75.2
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 3.0e-180 635.6 428 75.2
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 3.0e-180 635.6 429 75.3
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.0e-180 635.6 425 77.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.0e-180 635.6 436 74.5
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.0e-180 635.2 425 76.7
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 5.2e-180 634.8 428 75.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.2e-180 634.8 431 74.2
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 6.8e-180 634.4 428 74.8
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 6.8e-180 634.4 428 74.8
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 6.8e-180 634.4 428 75.0
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-179 633.3 428 75.0
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.6e-179 632.5 431 75.6
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 3.4e-179 632.1 409 76.8
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.4e-179 632.1 436 74.5
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.7e-179 631.3 511 66.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.5e-179 630.9 450 71.8
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.5e-179 630.9 429 74.6
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 7.5e-179 630.9 428 74.8
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 9.8e-179 630.6 427 74.2
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.8e-179 630.6 436 73.6
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.7e-178 629.8 428 74.8
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.7e-178 629.8 381 80.6
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.2e-178 629.4 444 72.3
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.7e-178 628.6 435 75.2
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 4.8e-178 628.2 550 62.2
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.0e-176 622.9 431 72.2
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.0e-176 622.9 433 72.3
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 2.0e-176 622.9 435 72.4
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 5.9e-176 621.3 408 75.5
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.0e-175 620.5 434 72.4
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 3.8e-175 618.6 428 72.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 4.2e-174 615.1 442 71.0
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 7.2e-174 614.4 434 71.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.4e-174 614.0 425 73.4
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.2e-173 613.6 429 72.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.1e-173 612.8 380 79.2
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.7e-173 612.5 464 70.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.7e-173 611.7 433 72.3
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.4e-172 610.1 429 71.6
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 2.3e-172 609.4 429 71.1
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.0e-172 609.0 425 72.9
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 4.0e-172 608.6 427 72.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.2e-171 607.1 392 74.5
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 2.6e-171 605.9 480 66.5
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.6e-171 605.9 429 72.0
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.5e-171 604.4 425 75.1
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 4.5e-168 595.1 409 72.9
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.3e-167 593.6 432 70.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.9e-166 589.7 381 74.8
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 5.6e-166 588.2 378 77.0
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 7.3e-166 587.8 381 77.2
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.0e-164 583.9 378 76.2
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.5e-163 580.1 387 74.7
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.9e-162 575.9 437 67.7
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-159 566.6 342 80.4
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 8.3e-154 547.7 337 80.4
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 9.2e-153 544.3 381 72.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 6.0e-152 541.6 351 78.3
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-150 537.3 351 77.5
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.9e-150 536.6 343 80.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 8.1e-149 531.2 363 73.3
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 7.1e-145 518.1 353 71.4
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.7e-141 505.4 350 72.9
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 9.9e-139 497.7 425 61.9
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 5.4e-137 491.9 376 65.4
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.2e-136 490.7 403 61.5
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.9e-135 485.7 348 71.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.6e-133 480.3 412 61.4
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.8e-133 479.6 434 59.2
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.6e-123 446.4 345 66.4
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.7e-120 436.4 261 80.8
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.1e-112 410.2 266 74.4
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.0e-112 408.7 266 78.6
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 2.6e-107 393.3 374 57.0
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 4.6e-96 355.9 234 77.4
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.2e-89 333.2 242 70.2
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 5.7e-86 322.4 189 84.7
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 6.3e-85 318.9 236 69.1
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.9e-81 307.4 365 45.2
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.3e-79 300.4 190 80.0
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 6.5e-74 282.3 355 47.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 4.5e-67 259.6 154 77.9
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.5e-62 242.3 185 64.3
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.5e-62 242.3 185 64.3
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 7.0e-60 235.7 146 79.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.3e-55 220.7 220 60.0
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-51 208.4 244 53.3
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 7.3e-41 172.6 147 60.5
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.2e-35 155.2 99 77.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-28 132.1 220 43.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.3e-26 125.2 295 35.9
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.1e-23 114.0 82 72.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.9e-21 107.5 74 77.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 6.6e-18 96.3 82 63.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.5e-17 94.4 79 62.0
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 3.3e-17 94.0 64 73.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 3.3e-17 94.0 64 73.4
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 9.6e-17 92.4 51 90.2
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.3e-13 82.0 47 87.2
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.3e-13 82.0 49 79.6
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.8e-13 80.5 90 47.8
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.4e-12 78.6 46 78.3
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 6.2e-08 63.2 43 62.8
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.0e-06 58.2 43 67.4
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 2.6e-06 57.8 61 44.3
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.8e-06 56.6 74 43.2
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 9.9e-06 55.8 74 44.6


User provided reference genes

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