Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.4e-65 250.8 118 100.0
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.5e-56 221.5 118 89.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 2.1e-29 132.5 114 54.4
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 2.8e-29 132.1 114 54.4
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.1e-28 130.2 128 55.5
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.0e-27 125.9 115 52.2
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 2.6e-27 125.6 121 49.6
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 7.6e-27 124.0 114 56.1
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.3e-26 123.2 113 51.3
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.3e-26 123.2 121 50.4
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 3.8e-26 121.7 116 51.7
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.9e-26 121.3 111 52.3
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.1e-25 120.2 115 50.4
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.9e-25 119.4 120 52.5
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.2e-25 118.2 116 50.9
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 7.1e-25 117.5 95 63.2
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 2.7e-24 115.5 127 44.1
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 3.5e-24 115.2 130 44.6
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 4.6e-24 114.8 109 50.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 6.0e-24 114.4 117 48.7
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-23 112.8 120 50.0
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 3.0e-23 112.1 111 47.7
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-23 112.1 115 49.6
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-23 112.1 115 49.6
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 3.0e-23 112.1 127 43.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 8.7e-23 110.5 115 49.6
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-22 110.2 115 48.7
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.1e-22 110.2 111 47.7
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.5e-22 109.8 131 42.0
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.5e-22 109.8 117 43.6
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 4.3e-22 108.2 119 44.5
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.3e-22 108.2 108 46.3
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 5.6e-22 107.8 107 47.7
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 5.6e-22 107.8 107 47.7
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 5.6e-22 107.8 107 47.7
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.6e-21 106.3 113 47.8
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 2.8e-21 105.5 114 50.9
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.6e-21 105.1 113 51.3
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.2e-21 104.4 136 40.4
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.8e-20 102.8 105 49.5
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.8e-20 102.8 108 44.4
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.4e-20 102.4 118 44.1
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-20 102.4 112 46.4
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 3.1e-20 102.1 114 45.6
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.1e-20 102.1 116 46.6
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 4.0e-20 101.7 134 36.6
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 4.0e-20 101.7 116 46.6
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 5.8e-19 97.8 116 39.7
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 7.6e-19 97.4 115 44.3
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.7e-18 96.3 113 42.5
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-18 95.9 116 45.7
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 3.8e-18 95.1 122 40.2
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 3.8e-18 95.1 118 41.5
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 4.9e-18 94.7 108 43.5
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 8.4e-18 94.0 119 37.8
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 8.4e-18 94.0 94 47.9
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.4e-17 93.2 118 40.7
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.4e-17 92.4 106 41.5
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 4.2e-17 91.7 118 39.8
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.4e-17 91.3 118 39.8
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.4e-17 91.3 115 39.1
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.2e-16 90.1 105 42.9
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 1.6e-16 89.7 66 60.6
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 2.7e-16 89.0 106 43.4
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 3.5e-16 88.6 115 40.0
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.0e-16 87.8 114 43.9
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 6.0e-16 87.8 87 50.6
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 1.8e-15 86.3 123 41.5
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 3.0e-15 85.5 120 36.7
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 3.0e-15 85.5 116 39.7
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 3.9e-15 85.1 107 39.3
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 8.7e-15 84.0 123 35.8
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 8.7e-15 84.0 110 40.9
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-14 83.6 117 41.0
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 1.1e-14 83.6 114 43.0
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.5e-14 83.2 109 41.3
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 2.5e-14 82.4 116 39.7
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.3e-14 82.0 102 40.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.3e-14 81.6 109 40.4
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 9.6e-14 80.5 91 42.9
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 9.6e-14 80.5 113 41.6
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-13 80.1 103 38.8
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-13 80.1 115 39.1
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.6e-13 79.7 120 39.2
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 4.8e-13 78.2 113 40.7
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 6.2e-13 77.8 115 37.4
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.1e-13 77.4 115 34.8
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 1.1e-12 77.0 123 34.1
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.4e-12 76.6 110 36.4
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 1.8e-12 76.3 115 39.1
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.4e-12 75.9 113 38.1
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 3.1e-12 75.5 117 36.8
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 4.0e-12 75.1 115 36.5
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 4.0e-12 75.1 115 36.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-12 74.3 118 37.3
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 6.9e-12 74.3 118 37.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 6.9e-12 74.3 118 37.3
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 6.9e-12 74.3 118 37.3
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 6.9e-12 74.3 97 36.1
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.9e-12 74.3 117 38.5
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 1.2e-11 73.6 115 40.9
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.5e-11 73.2 74 43.2
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.0e-11 72.8 91 40.7
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-11 72.8 86 39.5
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 2.6e-11 72.4 118 37.3
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.4e-11 72.0 103 36.9
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.4e-11 72.0 116 38.8
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 4.5e-11 71.6 113 33.6
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.6e-11 70.9 114 36.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.3e-10 70.1 118 36.4
Nn2g15314 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.3e-10 70.1 109 40.4
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.7e-10 69.7 80 45.0
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 1.7e-10 69.7 121 36.4
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 2.2e-10 69.3 80 41.2
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 2.9e-10 68.9 114 35.1
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 3.8e-10 68.6 102 32.4
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 4.9e-10 68.2 119 37.8
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 4.9e-10 68.2 112 33.9
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 4.9e-10 68.2 93 40.9
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 8.4e-10 67.4 116 36.2
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-09 67.0 118 35.6
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-09 67.0 118 35.6
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.4e-09 66.6 117 34.2
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-09 66.2 118 35.6
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.4e-09 65.9 107 39.3
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.4e-09 65.9 121 33.1
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.4e-09 65.9 119 36.1
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 4.2e-09 65.1 132 35.6
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 5.5e-09 64.7 104 34.6
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 7.1e-09 64.3 129 33.3
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 7.1e-09 64.3 118 34.7
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 7.1e-09 64.3 113 37.2
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 7.1e-09 64.3 115 33.9
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 9.3e-09 63.9 107 29.9
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.2e-08 63.5 124 34.7
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.6e-08 63.2 116 35.3
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 1.6e-08 63.2 111 32.4
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 2.7e-08 62.4 118 34.7
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 2.7e-08 62.4 118 34.7
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 3.5e-08 62.0 130 32.3
Aqoxy4G01164 Aquilegia oxysepala HOM05D007540 ORTHO05D009531 4.6e-08 61.6 130 30.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-07 60.5 118 32.2
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-07 60.5 111 36.0
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.0e-07 60.5 67 43.3
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-07 60.1 111 36.0
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-07 60.1 116 32.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 1.3e-07 60.1 111 36.0
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 1.3e-07 60.1 96 35.4
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 1.3e-07 60.1 112 33.9
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-07 59.7 109 37.6
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-07 59.7 111 36.0
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-07 59.7 129 34.9
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.8e-07 59.7 118 32.2
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.8e-07 59.7 113 31.9
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.3e-07 59.3 109 33.0
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 2.3e-07 59.3 119 32.8
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.0e-07 58.9 97 32.0
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.9e-07 58.5 113 38.1
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-07 58.5 108 34.3
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 3.9e-07 58.5 108 34.3
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 3.9e-07 58.5 99 34.3
Sed0007263 Sechium edule HOM05D005672 ORTHO05D003038 3.9e-07 58.5 89 33.7
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-07 58.2 117 29.9
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-07 58.2 122 29.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 5.1e-07 58.2 122 29.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 6.7e-07 57.8 111 34.2
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 8.7e-07 57.4 119 32.8
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 8.7e-07 57.4 123 31.7
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-06 57.0 108 35.2
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.1e-06 57.0 121 30.6
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-06 57.0 114 31.6
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-06 56.2 133 33.8
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 2.5e-06 55.8 110 34.5
Dinv30220 Davidia involucrata HOM05D009909 ORTHO05D011748 3.3e-06 55.5 104 28.8
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 4.3e-06 55.1 110 33.6
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.3e-06 55.1 109 31.2
PSO339G4924 Papaver somniferum HOM05D033620 ORTHO05D003038 4.3e-06 55.1 107 31.8
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 5.6e-06 54.7 137 32.8
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.6e-06 54.7 71 43.7
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 7.4e-06 54.3 117 29.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 7.4e-06 54.3 76 36.8
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.4e-06 54.3 88 30.7
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.4e-06 54.3 115 30.4
COL.COLO4_26662 Corchorus olitorius HOM05D005672 ORTHO05D003038 9.6e-06 53.9 89 39.3


User provided reference genes

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