Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.4e-60 236.1 120 100.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.6e-51 205.3 136 82.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.6e-51 205.3 136 82.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.6e-51 205.3 136 82.4
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 2.6e-51 205.3 136 82.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 7.7e-51 203.8 136 81.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.3e-50 203.0 136 81.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.5e-49 198.7 136 77.9
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.5e-49 198.7 136 78.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.2e-49 198.4 136 77.9
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.2e-49 198.4 136 77.9
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.2e-49 198.0 136 80.1
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.5e-49 197.6 136 80.1
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 7.2e-49 197.2 136 77.9
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 7.2e-49 197.2 136 77.9
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.2e-49 197.2 136 77.2
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.2e-49 197.2 136 77.2
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-48 196.1 136 80.1
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.1e-48 195.7 136 77.2
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.6e-48 194.9 136 76.5
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.6e-48 194.5 137 75.9
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.6e-48 194.5 136 75.7
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.9e-48 193.7 136 75.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 7.9e-48 193.7 136 77.9
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 7.9e-48 193.7 136 77.9
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.0e-47 193.4 136 77.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.0e-47 193.4 136 77.2
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.0e-47 193.4 136 75.7
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.4e-47 193.0 136 75.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-47 193.0 137 75.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.8e-47 192.6 127 79.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.8e-47 192.6 120 81.7
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.3e-47 192.2 136 75.7
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.3e-47 192.2 136 76.5
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.3e-47 192.2 136 77.2
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 3.9e-47 191.4 136 75.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.1e-47 191.0 136 75.0
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 6.7e-47 190.7 136 75.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.5e-46 189.5 136 74.3
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.5e-46 189.5 136 75.0
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-46 189.1 136 75.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.5e-46 188.7 149 71.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 3.3e-46 188.3 120 80.8
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.3e-46 188.3 136 73.5
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.3e-46 188.3 136 73.5
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 4.3e-46 188.0 137 75.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.7e-46 187.6 159 66.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 7.4e-46 187.2 120 82.5
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 9.7e-46 186.8 136 72.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.7e-45 186.0 138 73.2
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.7e-45 186.0 138 73.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.2e-45 185.7 138 73.2
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.8e-45 185.3 136 70.6
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.7e-45 184.9 137 75.2
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 4.8e-45 184.5 136 72.8
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 6.3e-45 184.1 136 71.3
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.2e-45 183.7 136 72.1
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 8.2e-45 183.7 136 72.8
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.1e-44 183.3 136 72.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.1e-44 183.3 136 70.6
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.4e-44 183.0 136 72.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 9.1e-44 180.3 172 58.1
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-43 179.9 136 71.3
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.2e-43 179.9 136 71.3
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.6e-43 178.7 136 70.6
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 2.6e-43 178.7 137 70.8
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.4e-43 178.3 136 69.9
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.4e-43 178.3 128 76.6
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.4e-43 178.3 137 73.0
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.8e-42 174.9 189 55.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.8e-42 174.9 153 62.7
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 8.5e-42 173.7 153 66.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-41 173.3 136 70.6
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 4.2e-41 171.4 139 69.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.2e-41 171.4 148 64.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.2e-41 171.4 136 69.9
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.2e-41 171.4 110 80.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.6e-40 169.5 169 59.8
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 4.7e-40 167.9 136 63.2
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 6.1e-40 167.5 140 66.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 6.1e-40 167.5 120 74.2
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.0e-39 166.8 120 70.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.0e-39 165.2 136 63.2
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.1e-38 163.3 136 61.0
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 5.7e-38 161.0 87 93.1
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 5.7e-38 161.0 87 93.1
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 4.8e-37 157.9 80 98.8
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 4.8e-37 157.9 80 98.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-36 156.4 80 97.5
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.4e-36 156.4 80 97.5
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.1e-36 155.2 120 70.0
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.5e-35 151.8 80 91.2
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 7.7e-35 150.6 79 92.4
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.0e-34 150.2 79 92.4
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-34 150.2 80 92.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-34 150.2 80 92.5
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.3e-34 149.8 97 79.4
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.3e-34 149.8 124 65.3
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-34 149.8 79 92.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-34 149.4 79 93.7
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.7e-34 149.4 79 92.4
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.2e-34 149.1 80 91.2
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.9e-34 148.7 82 89.0
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.9e-34 148.7 82 89.0
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.8e-34 148.3 79 93.7
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 6.5e-34 147.5 80 90.0
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 8.5e-34 147.1 79 91.1
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.9e-33 146.0 79 89.9
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.9e-33 146.0 79 89.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.2e-33 144.8 82 86.6
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 7.2e-33 144.1 80 86.2
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.2e-32 143.3 79 87.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.6e-32 142.9 99 72.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.1e-32 142.5 82 84.1
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 4.7e-32 141.4 79 84.8
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 8.0e-32 140.6 82 81.7
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.8e-31 139.4 86 77.9
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.3e-31 139.0 110 70.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.3e-31 139.0 79 83.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.3e-31 139.0 80 83.8
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.0e-31 138.7 79 83.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.0e-31 138.7 79 82.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 5.2e-31 137.9 79 83.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 6.7e-31 137.5 79 83.5
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 8.8e-31 137.1 158 47.5
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.5e-30 136.3 80 82.5
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 5.7e-30 134.4 78 83.3
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.8e-29 132.1 110 64.5
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.7e-29 131.7 75 84.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 2.4e-28 129.0 76 78.9
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.1e-28 128.6 75 80.0
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 6.5e-26 120.9 112 58.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.7e-22 107.8 57 93.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 7.5e-22 107.5 56 94.6
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.3e-21 106.7 54 98.1
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.7e-21 105.1 75 60.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.4e-20 102.4 143 39.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.5e-19 98.6 55 87.3
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 3.8e-18 95.1 80 70.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.5e-18 94.4 133 40.6
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 6.5e-18 94.4 128 40.6
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 4.2e-17 91.7 80 68.8
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 5.2e-15 84.7 45 88.9
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 2.0e-11 72.8 87 50.6
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 2.3e-10 69.3 92 44.6
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 2.5e-09 65.9 35 91.4
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.3e-09 65.5 35 88.6
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.2e-09 65.1 35 88.6
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 9.5e-09 63.9 35 88.6
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 9.5e-09 63.9 35 88.6
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 9.5e-09 63.9 35 88.6
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 9.5e-09 63.9 35 88.6
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 1.2e-08 63.5 35 88.6
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.1e-08 62.8 35 82.9
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.8e-08 62.4 35 82.9
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.7e-08 61.6 30 96.7
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.0e-07 60.5 29 96.6


User provided reference genes

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