Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1494.2 746 100.0
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1470.7 752 97.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1394.0 748 93.4
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1394.0 748 93.4
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1393.6 745 92.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1390.9 748 93.3
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1390.6 748 93.0
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1388.2 748 92.9
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1387.5 746 92.2
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1387.1 746 92.1
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1387.1 748 92.9
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1387.1 748 92.9
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1385.2 746 91.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1373.6 779 88.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1355.1 749 90.0
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1335.9 748 87.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 746 84.3
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 748 81.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 748 82.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 746 81.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 746 82.2
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 748 81.0
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1235.3 746 81.1
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 746 80.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 745 80.9
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 746 81.5
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 747 80.6
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 749 80.8
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 747 80.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 748 81.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 748 80.3
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 747 80.5
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 747 80.5
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 750 79.7
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 749 80.0
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 747 79.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 747 80.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 749 80.2
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 747 80.1
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 748 79.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 750 79.1
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 748 80.1
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 746 80.3
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 749 80.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 746 80.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 748 79.9
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1207.6 749 79.3
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 747 80.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 747 79.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 748 79.7
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 745 79.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 748 78.9
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 747 79.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 751 79.6
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 747 80.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 744 78.6
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 746 79.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 746 79.2
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 744 79.2
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 746 78.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 744 78.9
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 744 79.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 748 78.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 779 76.4
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 745 79.1
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 758 79.7
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 748 78.3
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 745 78.4
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 758 79.6
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 760 78.3
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 746 78.7
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 747 79.1
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 748 78.7
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1187.9 803 75.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 746 79.2
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1186.0 750 78.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1184.5 746 78.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 746 78.3
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 747 79.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 743 79.1
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 749 78.5
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1181.0 747 78.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 750 78.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 750 77.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 749 78.2
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1176.8 750 77.7
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1174.1 746 78.3
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 748 78.1
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 842 71.3
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 746 77.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 741 77.3
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 746 78.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 747 76.8
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1165.6 747 77.5
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1164.4 748 77.5
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1162.1 734 78.6
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 705 80.1
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1160.2 751 76.2
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1159.4 699 80.3
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1154.0 749 76.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 746 76.4
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1149.4 740 76.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1139.8 747 76.0
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1134.4 734 77.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1112.1 657 81.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1112.1 657 81.6
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 657 81.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1106.3 747 73.6
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1102.0 751 73.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1098.2 664 81.5
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1086.6 723 74.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1084.7 746 72.5
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1076.6 734 73.2
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 1.0e-311 1072.8 748 73.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.6e-311 1071.6 1054 56.2
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 7.1e-304 1047.0 657 79.3
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 6.2e-300 1033.9 622 81.7
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.0e-286 988.4 748 68.7
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.6e-279 966.1 676 69.7
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 6.0e-279 964.1 680 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.4e-274 948.3 678 66.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 677 67.9
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 677 67.9
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.5e-274 948.0 689 67.6
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.3e-273 946.4 677 67.8
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-248 863.2 593 72.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.2e-248 861.7 680 62.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.7e-245 851.3 593 72.3
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 2.6e-221 772.7 679 56.3
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.8e-219 766.5 685 56.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 8.3e-212 741.1 677 56.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 8.6e-201 704.5 675 58.8
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 7.8e-194 681.4 736 48.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.8e-170 601.7 305 96.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 6.2e-167 592.0 744 44.1
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 9.0e-158 561.6 321 87.2
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.7e-153 545.4 294 91.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 5.6e-152 542.3 362 72.7
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.0e-140 505.0 300 85.0
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 3.0e-129 466.8 301 77.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.0e-116 425.2 309 66.7
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 7.5e-104 382.5 236 77.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.5e-93 347.1 241 71.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.8e-92 343.6 219 76.7
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.2e-88 332.0 224 77.2
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-86 325.1 299 59.5
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.4e-86 324.3 299 58.9
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 7.3e-67 259.6 172 72.1
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-65 255.8 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.7e-63 248.4 393 44.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-61 242.3 175 70.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.7e-61 241.1 366 38.3
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-58 232.3 113 96.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.5e-56 225.3 260 50.0
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.6e-45 188.7 142 72.5
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 5.1e-44 183.7 162 61.7
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.1 158 58.9
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 5.5e-38 163.7 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 8.7e-36 156.4 96 79.2
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 2.4e-33 148.3 142 53.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.5e-32 145.6 122 62.3
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.1e-29 135.2 137 58.4
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.0e-28 132.9 83 77.1
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.1e-26 125.2 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-26 124.4 139 51.8
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.3e-26 123.6 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 6.5e-23 113.6 99 61.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.5e-23 113.2 221 30.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.1e-21 108.6 141 53.2
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 77.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 4.6e-13 80.9 56 71.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.3e-10 72.8 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.2e-06 57.0 35 71.4


User provided reference genes

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