Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 5.3e-78 294.3 148 100.0
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 1.5e-64 249.6 148 80.4
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 4.4e-64 248.1 148 79.1
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 4.8e-63 244.6 148 77.0
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 4.8e-63 244.6 148 77.7
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 8.2e-63 243.8 148 78.4
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 1.1e-62 243.4 148 77.0
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.1e-62 243.4 149 77.9
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.1e-62 243.4 148 77.7
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 2.4e-62 242.3 148 76.4
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.2e-61 240.0 149 76.5
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.2e-61 240.0 149 76.5
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 3.5e-61 238.4 149 75.8
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 4.5e-61 238.0 148 74.3
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 4.7e-58 228.0 148 73.6
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 2.3e-57 225.7 148 73.0
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 2.3e-57 225.7 148 73.0
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 4.0e-57 224.9 148 71.6
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 4.0e-57 224.9 148 72.3
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 6.7e-57 224.2 148 72.3
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 6.7e-57 224.2 148 72.3
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 8.8e-57 223.8 148 72.3
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.5e-56 223.0 148 71.6
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 1.5e-56 223.0 148 72.3
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 2.6e-56 222.2 148 70.9
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 4.4e-56 221.5 148 71.6
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 5.7e-56 221.1 148 68.2
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 5.7e-56 221.1 148 71.6
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 71.6
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 9.7e-56 220.3 144 71.5
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 9.7e-56 220.3 148 70.3
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 69.6
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 71.6
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 68.2
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 68.2
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 2.8e-55 218.8 148 73.6
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.7e-55 218.4 148 72.3
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 69.6
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 70.3
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.1e-54 214.9 148 67.6
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.3e-54 214.5 172 62.2
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 7.0e-54 214.2 148 70.3
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 9.1e-54 213.8 172 62.2
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 1.6e-53 213.0 148 70.9
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 1.6e-53 213.0 148 70.9
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.6e-53 213.0 148 69.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 7.7e-53 210.7 147 68.0
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.0e-52 210.3 149 69.8
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 3.8e-52 208.4 148 65.5
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 1.1e-51 206.8 141 69.5
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.5e-51 206.5 145 66.2
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 1.9e-51 206.1 154 66.9
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 64.9
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 64.9
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 4.2e-51 204.9 186 58.1
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 5.5e-51 204.5 148 67.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 9.4e-51 203.8 148 65.5
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 9.4e-51 203.8 149 67.1
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 1.6e-50 203.0 148 65.5
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.6e-50 203.0 148 65.5
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.6e-50 203.0 149 69.1
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 1.6e-50 203.0 145 67.6
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 2.7e-50 202.2 148 64.2
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.7e-50 202.2 148 64.9
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.6e-50 201.8 146 66.4
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.7e-50 201.4 148 67.6
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 8.0e-50 200.7 146 65.1
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.0e-49 200.3 168 60.7
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 1.0e-49 200.3 146 67.8
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.8e-49 199.5 146 65.1
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 2.3e-49 199.1 153 64.7
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.3e-49 199.1 151 64.2
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 2.3e-49 199.1 165 61.8
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 5.2e-49 198.0 146 64.4
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 8.8e-49 197.2 148 63.5
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 2.6e-48 195.7 149 62.4
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 4.4e-48 194.9 146 60.3
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 5.7e-48 194.5 148 62.8
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 7.5e-48 194.1 148 64.9
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 7.5e-48 194.1 213 50.2
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 7.5e-48 194.1 146 63.0
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.7e-47 193.0 148 61.5
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 3.7e-47 191.8 146 63.7
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 3.7e-47 191.8 149 63.1
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 7.0e-46 187.6 144 60.4
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 2.0e-45 186.0 171 57.3
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 3.5e-45 185.3 145 57.2
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.7e-44 183.0 131 66.4
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.9e-43 179.5 147 60.5
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 2.5e-43 179.1 134 61.9
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 4.2e-43 178.3 174 54.6
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 9.5e-43 177.2 124 65.3
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.2e-39 166.0 120 65.0
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.8e-38 162.9 111 73.9
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 1.7e-36 156.4 119 59.7
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.0e-33 147.1 104 67.3
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 6.4e-31 137.9 104 64.4
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.0e-28 130.6 148 49.3
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 5.6e-27 124.8 92 63.0
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 8.0e-26 120.9 100 52.0
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 1.4e-22 110.2 145 33.8
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 3.2e-22 109.0 103 58.3
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.5e-21 105.5 82 65.9
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.1e-18 96.3 66 69.7
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 9.9e-16 87.4 65 63.1
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.7e-15 86.7 64 64.1
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 8.3e-15 84.3 77 51.9
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 2.4e-14 82.8 151 31.1
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 5.4e-14 81.6 140 31.4
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 7.1e-14 81.3 45 75.6
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 2.1e-13 79.7 123 42.3
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 1.3e-12 77.0 66 59.1
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 3.9e-12 75.5 66 53.0
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 6.8e-09 64.7 38 76.3
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 3.4e-08 62.4 44 72.7


User provided reference genes

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