Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 4.4e-259 897.5 477 100.0
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 3.2e-169 599.0 481 70.5
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 9.8e-166 587.4 481 70.5
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 2.4e-164 582.8 481 68.6
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.3e-162 576.2 480 69.4
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 4.3e-161 572.0 480 66.0
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 9.5e-161 570.9 481 68.4
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.9e-157 558.5 480 67.1
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 6.6e-154 548.1 482 63.9
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.0e-142 510.0 433 68.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.9e-141 506.1 438 65.3
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 5.1e-138 495.4 488 58.6
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.3e-105 386.0 485 46.4
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 6.2e-104 382.1 488 50.8
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.4e-103 380.2 484 47.9
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 6.9e-103 378.6 500 47.0
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 2.6e-102 376.7 461 48.2
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 3.4e-102 376.3 483 46.6
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 4.5e-102 375.9 482 47.5
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.8e-101 372.9 479 47.0
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 6.5e-101 372.1 492 46.3
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.2e-100 369.8 479 47.4
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 4.2e-100 369.4 479 48.4
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 5.5e-100 369.0 470 47.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 7.1e-100 368.6 501 46.7
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 7.1e-100 368.6 509 45.0
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.6e-99 367.5 498 45.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.6e-99 367.5 510 45.9
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.1e-99 367.1 460 47.2
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.7e-99 366.7 522 44.8
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.5e-99 366.3 439 47.8
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.5e-99 366.3 481 46.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 4.6e-99 365.9 491 45.8
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 1.0e-98 364.8 465 47.3
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 3.9e-98 362.8 489 45.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 2.5e-97 360.1 423 48.9
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 4.3e-97 359.4 461 48.6
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 4.3e-97 359.4 430 50.2
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 5.7e-97 359.0 466 48.3
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 7.4e-97 358.6 495 45.7
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.3e-96 357.8 442 48.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.6e-96 357.5 507 45.6
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.8e-96 356.7 495 45.9
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.7e-96 356.3 473 46.7
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 4.8e-96 355.9 482 47.3
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.8e-95 354.0 441 45.6
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 2.4e-95 353.6 476 45.4
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 4.1e-95 352.8 449 46.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 6.9e-95 352.1 417 48.2
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 6.9e-95 352.1 487 46.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 9.0e-95 351.7 508 46.1
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.2e-94 351.3 433 47.1
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.2e-94 351.3 523 42.6
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 2.6e-94 350.1 422 47.9
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 5.9e-94 349.0 487 43.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.3e-93 347.8 497 44.5
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.7e-93 347.4 416 49.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.8e-93 346.3 497 43.9
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.1e-92 344.7 357 52.1
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.1e-92 344.7 339 53.1
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.4e-92 344.4 497 44.1
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.4e-92 344.4 455 45.7
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.6e-91 340.9 335 53.7
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 2.7e-91 340.1 492 46.1
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 4.6e-91 339.3 332 52.7
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 6.1e-91 339.0 420 45.2
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.9e-91 338.6 335 52.8
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 7.9e-91 338.6 337 53.1
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.0e-90 338.2 334 53.0
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.3e-90 337.8 464 44.2
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.0e-90 336.7 357 51.0
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 5.1e-90 335.9 469 44.8
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.5e-89 334.3 335 52.5
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.9e-89 334.0 357 51.0
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.3e-89 333.2 327 53.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 4.3e-89 332.8 436 44.7
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.3e-88 331.3 552 41.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 4.1e-87 326.2 361 49.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.0e-85 321.6 421 48.0
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 2.9e-85 320.1 450 45.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.1e-84 318.2 512 42.0
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 9.4e-84 315.1 357 47.3
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 6.1e-83 312.4 422 47.9
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.4e-82 311.2 456 42.1
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 3.9e-82 309.7 330 47.3
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.1e-81 308.1 473 43.3
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.1e-79 300.1 450 40.2
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 2.0e-78 297.4 377 43.5
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 7.7e-78 295.4 346 47.7
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 3.2e-76 290.0 358 46.4
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.1e-73 281.6 436 39.9
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.6e-73 280.4 364 50.3
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.0e-66 256.9 501 36.5
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.7e-65 252.7 343 43.7
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.7e-64 251.1 312 44.6
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.4e-63 248.1 297 46.1
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 7.0e-63 245.7 326 46.9
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 2.7e-62 243.8 344 39.8
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 5.5e-60 236.1 319 46.4
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.5e-57 228.0 299 46.8
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.7e-54 217.2 437 36.2
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 3.5e-54 216.9 328 37.5
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.2e-51 208.4 484 32.9
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.3e-50 204.1 316 38.6
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.6e-49 200.7 233 45.9
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.1e-43 179.5 170 56.5
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 7.5e-41 172.6 165 53.3
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-39 168.7 208 46.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.6e-36 156.4 110 67.3
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.7e-35 153.3 260 35.4
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 3.4e-33 147.1 125 59.2
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.2e-32 144.4 158 53.8
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 2.7e-30 137.5 260 32.3
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 7.3e-28 129.4 118 55.9
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.2e-27 128.6 177 39.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 3.7e-24 117.1 297 32.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-21 109.0 87 58.6
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.3e-21 108.6 161 36.6
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 6.6e-21 106.3 141 45.4
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.6e-19 100.5 239 31.8
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 7.6e-17 92.8 159 40.3
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 7.6e-17 92.8 159 40.3
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.7e-16 91.7 60 68.3
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.2e-15 87.4 64 59.4
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 5.6e-12 76.6 121 33.9
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.7e-11 73.6 50 64.0
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.0e-09 68.2 68 48.5
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 5.8e-09 66.6 49 59.2
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 7.6e-09 66.2 46 65.2
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 3.2e-07 60.8 140 37.9
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 2.7e-06 57.8 43 62.8


User provided reference genes

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