Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.0e-176 623.2 305 100.0
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 9.5e-114 414.1 295 73.6
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 3.4e-111 405.6 298 70.8
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 4.4e-111 405.2 299 72.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 9.8e-111 404.1 295 70.8
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.7e-110 403.3 298 72.1
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 6.4e-110 401.4 298 71.8
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.4e-109 399.4 297 71.4
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.4e-109 399.4 297 71.4
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.2e-108 397.1 298 70.1
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 4.6e-108 395.2 298 69.1
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 5.1e-91 338.6 292 59.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.2e-89 334.0 292 57.5
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.1e-89 333.2 293 58.0
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 3.6e-89 332.4 298 58.4
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.8e-88 330.1 290 58.3
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 2.3e-88 329.7 293 56.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 4.0e-88 328.9 299 55.5
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 2.0e-87 326.6 294 56.8
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 3.4e-87 325.9 293 58.0
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.4e-87 325.5 302 56.3
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 4.4e-87 325.5 294 57.1
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.7e-86 323.6 290 57.6
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.9e-86 322.8 299 53.8
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 3.8e-86 322.4 307 58.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 4.9e-86 322.0 325 52.6
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 6.4e-86 321.6 294 56.5
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 8.4e-86 321.2 293 56.0
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 8.4e-86 321.2 296 57.8
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.4e-85 318.5 294 57.1
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 7.1e-85 318.2 299 54.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 2.1e-84 316.6 292 56.2
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.1e-84 316.6 294 56.8
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.1e-84 316.6 295 55.9
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.7e-84 316.2 290 55.9
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 3.5e-84 315.8 292 55.5
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 4.6e-84 315.5 290 55.9
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 6.0e-84 315.1 296 55.1
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.7e-83 313.5 297 55.6
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 3.9e-83 312.4 298 56.4
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 3.9e-83 312.4 296 55.1
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 8.6e-83 311.2 289 56.1
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.1e-82 310.8 289 56.1
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.5e-82 310.5 312 52.6
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 5.6e-82 308.5 298 55.4
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 6.2e-81 305.1 385 44.7
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.1e-80 304.3 315 52.7
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 4.0e-80 302.4 296 55.1
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 5.2e-80 302.0 293 52.9
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 6.9e-80 301.6 291 54.6
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.5e-79 300.4 304 53.0
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.5e-79 300.4 295 53.2
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.5e-79 300.4 294 55.1
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 3.4e-79 299.3 296 53.0
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 7.6e-79 298.1 290 53.8
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 7.6e-79 298.1 295 52.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 1.3e-78 297.4 293 52.2
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.2e-78 296.6 295 52.5
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 2.9e-78 296.2 307 50.2
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.9e-78 296.2 335 49.6
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 3.8e-78 295.8 293 53.9
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 6.4e-78 295.0 297 51.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.1e-77 294.3 316 49.1
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.4e-77 293.9 290 52.8
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.4e-77 293.9 297 52.5
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.4e-77 293.9 361 46.0
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.4e-77 293.1 333 49.5
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 4.2e-77 292.4 296 52.7
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.4e-77 292.0 304 52.3
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 2.1e-76 290.0 215 65.6
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.7e-76 289.7 291 51.2
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 2.7e-76 289.7 296 53.4
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 1.0e-75 287.7 297 51.2
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.7e-75 287.0 167 76.6
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 5.1e-75 285.4 334 48.5
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.9e-74 283.5 298 50.0
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.6e-73 280.4 288 50.0
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 3.6e-73 279.3 291 51.9
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.4e-72 276.6 315 47.9
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 4.0e-72 275.8 295 48.5
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.2e-71 274.2 218 62.4
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.9e-69 266.9 288 48.3
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 3.2e-69 266.2 289 48.8
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.0e-67 261.2 298 46.6
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.9e-67 259.2 282 50.7
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.1e-66 257.7 290 49.7
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.5e-66 257.3 288 47.9
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 6.2e-65 251.9 167 67.7
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 2.4e-64 250.0 404 41.1
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 5.3e-64 248.8 284 47.2
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 4.2e-61 239.2 148 70.3
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 3.9e-59 232.6 366 39.9
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.1e-58 231.1 140 72.1
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 6.9e-56 221.9 292 42.8
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 6.0e-52 208.8 240 47.1
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.3e-49 201.1 303 40.3
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 7.6e-47 191.8 119 73.9
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.7e-46 190.7 410 34.4
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 6.5e-46 188.7 299 40.5
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.1e-45 188.0 114 74.6
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 6.1e-44 182.2 240 40.8
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.3e-43 181.0 117 69.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.2e-41 173.7 236 41.5
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 3.7e-41 172.9 256 39.1
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 9.1e-40 168.3 288 34.7
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 3.6e-36 156.4 152 53.9
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 6.7e-35 152.1 177 47.5
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 4.4e-34 149.4 92 71.7
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.1e-32 142.9 89 73.0
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 7.4e-26 122.1 194 40.2
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 5.0e-22 109.4 237 32.9
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 3.6e-20 103.2 333 27.3
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 8.2e-17 92.0 73 58.9
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 7.0e-16 89.0 53 77.4
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 7.0e-16 89.0 51 76.5
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 2.2e-14 84.0 178 37.6
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 8.5e-14 82.0 145 40.7
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.1e-13 81.6 59 59.3
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 2.3e-11 73.9 188 29.8
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 1.5e-10 71.2 246 26.8
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 2.2e-09 67.4 52 63.5
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.7e-09 66.6 148 30.4
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.6e-07 61.2 144 27.1
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.5e-07 60.1 144 25.7
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 4.5e-07 59.7 144 27.1
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 7.7e-07 58.9 48 56.2
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 2.9e-06 57.0 144 25.7
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 2.9e-06 57.0 144 27.1
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 3.8e-06 56.6 144 27.8
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 3.8e-06 56.6 144 25.7
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 6.5e-06 55.8 31 67.7


User provided reference genes

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