Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.8e-166 588.2 318 100.0
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.4e-138 495.0 318 84.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 4.1e-136 488.4 318 84.6
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 9.2e-136 487.3 318 83.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.2e-135 486.9 318 84.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.0e-135 486.1 318 84.3
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.5e-135 485.3 312 84.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 5.0e-134 481.5 318 82.1
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 5.0e-134 481.5 318 82.1
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 5.0e-134 481.5 318 82.1
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.5e-133 479.9 318 81.8
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 5.6e-133 478.0 318 81.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.1e-132 476.1 318 82.1
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 2.3e-131 472.6 318 81.8
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.4e-130 468.8 318 81.1
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.9e-129 465.7 318 80.5
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 4.9e-129 464.9 318 80.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.3e-125 452.2 321 76.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 7.5e-122 441.0 291 82.1
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.5e-117 426.0 318 75.2
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.6e-98 361.3 309 60.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 7.6e-98 361.3 309 60.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.2e-97 359.8 311 62.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.9e-96 356.7 314 58.0
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.9e-96 356.7 312 59.6
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.2e-96 355.9 309 57.3
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.2e-96 355.5 309 58.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.2e-95 354.0 308 58.4
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.7e-95 352.8 311 60.1
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 2.7e-95 352.8 311 58.8
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 7.9e-95 351.3 308 58.4
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.8e-94 350.1 308 58.4
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 6.7e-94 348.2 308 58.8
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.1e-93 347.4 314 63.7
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-93 347.1 308 59.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.9e-93 346.7 316 63.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.3e-93 345.9 310 57.4
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 3.3e-93 345.9 309 57.0
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.3e-93 345.5 312 56.7
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.3e-93 345.5 311 58.8
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.4e-93 344.7 312 56.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.6e-92 343.6 308 57.8
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.7e-92 342.4 312 56.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 3.7e-92 342.4 307 57.7
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.8e-92 342.0 310 57.1
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 6.2e-92 341.7 308 57.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 8.1e-92 341.3 312 57.4
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.1e-91 339.3 314 57.3
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.1e-91 339.3 312 56.7
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.0e-91 339.0 308 56.8
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 5.3e-91 338.6 307 57.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 5.3e-91 338.6 308 56.2
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 6.9e-91 338.2 308 56.5
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 9.0e-91 337.8 297 62.6
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.0e-91 337.8 308 55.2
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 9.0e-91 337.8 311 58.2
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 9.0e-91 337.8 309 55.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.5e-90 337.0 308 54.5
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-90 337.0 312 55.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.5e-90 337.0 309 55.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.0e-90 336.7 315 58.1
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.6e-90 336.3 310 56.5
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.5e-90 335.5 308 55.2
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 5.8e-90 335.1 310 55.8
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 5.8e-90 335.1 317 56.2
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.6e-90 334.7 308 55.2
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 4.9e-89 332.0 311 55.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 6.4e-89 331.6 319 51.7
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 6.4e-89 331.6 312 56.7
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 6.4e-89 331.6 311 54.7
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 8.4e-89 331.3 311 54.7
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.1e-88 330.9 302 56.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.4e-88 330.5 309 55.7
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.3e-88 327.8 325 53.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 9.3e-88 327.8 309 55.7
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-87 327.0 309 55.7
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.7e-87 326.2 308 56.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.8e-86 323.6 363 48.8
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.3e-86 323.2 311 53.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.0e-86 322.8 269 61.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.9e-86 322.4 314 54.8
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.9e-86 322.4 314 54.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 6.7e-86 321.6 313 52.1
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.9e-85 320.1 277 57.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.9e-85 320.1 331 52.6
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 7.4e-85 318.2 277 55.6
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.1e-84 316.6 279 56.6
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 8.2e-84 314.7 326 49.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.4e-83 313.2 277 57.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.9e-83 311.6 277 54.5
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 9.0e-83 311.2 308 52.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.2e-82 310.8 276 56.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.0e-82 310.1 309 51.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.6e-82 309.7 310 53.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.4e-81 304.7 310 52.6
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 8.4e-81 304.7 331 50.8
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.1e-80 304.3 318 49.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.6e-79 298.9 305 50.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.6e-79 298.9 306 49.0
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 6.0e-79 298.5 277 61.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 7.9e-79 298.1 325 47.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-78 297.0 276 58.3
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.8e-78 297.0 306 52.0
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.7e-78 294.7 328 50.0
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.8e-76 288.9 279 52.3
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 8.2e-76 288.1 277 52.7
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.4e-74 282.7 314 50.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.3e-73 280.8 241 59.8
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 6.1e-71 271.9 278 58.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.2e-68 263.5 241 57.7
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.2e-68 263.5 286 49.7
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.2e-66 257.7 250 52.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.4e-66 256.1 234 56.4
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.9e-65 253.1 266 51.1
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.5e-65 251.9 263 50.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.0e-62 244.6 222 59.0
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 3.3e-61 239.6 318 42.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.3e-60 237.7 218 57.8
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.5e-58 229.6 274 45.6
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 5.5e-56 222.2 277 42.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.0e-54 218.0 315 41.6
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.6e-50 204.1 191 55.0
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.6e-47 193.0 196 51.5
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 8.3e-44 181.8 137 65.7
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 7.0e-43 178.7 165 55.8
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 5.7e-37 159.1 279 37.3
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.1e-35 151.8 109 62.4
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 2.1e-31 140.6 192 46.9
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 4.3e-24 116.3 113 51.3
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 7.3e-24 115.5 106 55.7
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 2.8e-07 60.5 275 25.5


User provided reference genes

Program Settings