Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 1.4e-53 212.6 105 100.0
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 8.7e-51 203.4 105 97.1
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 4.3e-50 201.1 105 96.2
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 7.4e-50 200.3 105 95.2
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 7.4e-50 200.3 105 95.2
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 7.4e-50 200.3 105 95.2
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 2.2e-49 198.7 105 94.3
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 3.7e-49 198.0 105 93.3
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 8.2e-49 196.8 105 92.4
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 8.2e-49 196.8 105 92.4
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 1.1e-48 196.4 105 93.3
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 1.1e-48 196.4 105 93.3
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 1.1e-48 196.4 105 93.3
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 1.1e-48 196.4 105 93.3
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 1.1e-48 196.4 105 93.3
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 1.4e-48 196.1 105 92.4
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 1.8e-48 195.7 105 92.4
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 1.8e-48 195.7 105 91.4
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.1e-48 194.9 105 91.4
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.1e-48 194.9 105 91.4
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 5.3e-48 194.1 105 91.4
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.3e-48 194.1 105 90.5
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.3e-48 194.1 105 90.5
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.3e-48 194.1 105 90.5
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.3e-48 194.1 105 90.5
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 9.0e-48 193.4 105 90.5
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 1.2e-47 193.0 105 91.4
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 1.2e-47 193.0 105 91.4
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.2e-47 193.0 105 90.5
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 1.5e-47 192.6 105 89.5
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 2.0e-47 192.2 105 88.6
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 2.6e-47 191.8 105 89.5
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 4.5e-47 191.0 105 88.6
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 4.5e-47 191.0 105 88.6
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 4.5e-47 191.0 105 88.6
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 5.9e-47 190.7 105 88.6
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 5.9e-47 190.7 105 90.5
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 5.9e-47 190.7 105 89.5
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 7.7e-47 190.3 105 90.5
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 1.0e-46 189.9 105 88.6
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 1.0e-46 189.9 105 87.6
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 1.0e-46 189.9 105 88.6
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 1.3e-46 189.5 105 87.6
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 87.5
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 1.7e-46 189.1 105 87.6
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 1.7e-46 189.1 105 87.6
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 1.7e-46 189.1 105 87.6
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 1.7e-46 189.1 105 86.7
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 1.7e-46 189.1 105 85.7
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 2.2e-46 188.7 105 87.6
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 2.2e-46 188.7 105 87.6
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 2.2e-46 188.7 105 86.7
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 87.5
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 2.2e-46 188.7 105 87.6
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 2.9e-46 188.3 105 87.6
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 2.9e-46 188.3 105 86.7
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.9e-46 188.3 105 85.7
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 3.8e-46 188.0 105 86.7
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 3.8e-46 188.0 105 86.7
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 3.8e-46 188.0 105 88.6
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 5.0e-46 187.6 105 86.7
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 5.0e-46 187.6 106 88.7
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 5.0e-46 187.6 105 87.6
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 6.5e-46 187.2 105 84.8
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 6.5e-46 187.2 105 86.7
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 8.5e-46 186.8 105 87.6
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 8.5e-46 186.8 105 86.7
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 8.5e-46 186.8 105 86.7
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 8.5e-46 186.8 105 85.7
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.1e-45 186.4 105 86.7
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.1e-45 186.4 105 86.7
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 1.1e-45 186.4 105 86.7
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 1.4e-45 186.0 105 87.6
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 1.4e-45 186.0 105 84.8
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 2.5e-45 185.3 105 84.8
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.5e-45 185.3 105 84.8
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 3.2e-45 184.9 105 84.8
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 4.2e-45 184.5 105 83.8
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 5.5e-45 184.1 105 83.8
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 5.5e-45 184.1 105 83.8
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 5.5e-45 184.1 105 85.7
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 7.2e-45 183.7 105 82.9
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 9.4e-45 183.3 105 82.9
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 9.4e-45 183.3 105 84.8
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 1.2e-44 183.0 105 82.9
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 1.2e-44 183.0 105 82.9
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 1.6e-44 182.6 105 83.8
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.6e-44 182.6 105 82.9
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 1.6e-44 182.6 105 83.8
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 2.1e-44 182.2 105 83.8
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 3.6e-44 181.4 105 83.8
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 6.1e-44 180.6 105 82.9
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 6.1e-44 180.6 105 83.8
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 6.1e-44 180.6 105 82.9
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 7.9e-44 180.3 111 81.1
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 7.9e-44 180.3 105 83.8
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 1.4e-43 179.5 105 81.0
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 1.4e-43 179.5 105 83.8
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 1.8e-43 179.1 105 81.9
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 2.3e-43 178.7 105 81.0
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 3.0e-43 178.3 105 84.8
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 3.0e-43 178.3 105 83.8
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 3.0e-43 178.3 105 83.8
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 6.7e-43 177.2 105 81.9
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 1.1e-42 176.4 131 71.0
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 1.1e-42 176.4 105 81.9
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.1e-42 176.4 105 80.0
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 1.5e-42 176.0 131 71.0
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 1.5e-42 176.0 105 81.0
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 1.5e-42 176.0 105 81.0
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 3.3e-42 174.9 107 83.2
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 4.3e-42 174.5 105 81.9
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 4.3e-42 174.5 105 81.9
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 4.3e-42 174.5 105 81.9
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 7.4e-42 173.7 104 79.8
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 1.7e-41 172.6 105 79.0
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 2.2e-41 172.2 105 79.0
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 3.7e-41 171.4 105 81.0
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 3.7e-41 171.4 105 81.0
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 2.4e-40 168.7 105 78.1
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.5e-39 166.0 105 74.3
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 2.2e-38 162.2 168 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 6.1e-36 154.1 105 71.4
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 6.1e-36 154.1 78 91.0
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 4.4e-34 147.9 105 66.7
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 4.8e-33 144.4 105 67.6
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 1.1e-32 143.3 89 78.7
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.4e-32 142.9 105 73.3
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.4e-32 142.9 77 92.2
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 9.1e-32 140.2 105 63.8
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.0e-31 139.0 77 90.9
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 5.9e-31 137.5 92 79.3
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 2.6e-26 122.1 105 57.1
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 5.9e-23 110.9 57 87.7
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.2e-21 104.8 58 91.4
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 7.2e-21 104.0 80 68.8
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 1.4e-19 99.8 69 79.7
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.8e-16 89.4 56 85.7
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 3.1e-16 88.6 57 80.7
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 4.1e-16 88.2 75 50.7
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 7.0e-16 87.4 54 83.3
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 2.7e-15 85.5 75 49.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.7e-12 75.5 54 75.9


User provided reference genes

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