Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 0.0e+00 1135.6 571 100.0
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.2e-288 994.6 572 87.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 6.0e-287 990.3 572 86.9
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 9.6e-285 983.0 572 86.2
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-284 980.3 572 85.8
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-284 980.3 572 85.8
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-284 980.3 572 85.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.1e-280 969.5 572 84.6
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.5e-277 959.1 577 83.2
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 3.3e-277 958.0 572 83.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 7.3e-277 956.8 572 83.7
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.6e-276 955.7 572 83.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 9.0e-275 949.9 573 82.9
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 3.2e-272 941.4 572 82.3
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.1e-251 871.7 570 75.6
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.2e-248 860.5 571 75.5
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 9.4e-248 860.1 572 75.7
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.2e-247 859.8 572 74.7
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 3.6e-247 858.2 573 74.3
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 3.6e-247 858.2 569 75.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 7.9e-247 857.1 571 74.1
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 3.0e-246 855.1 573 74.2
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 6.7e-246 854.0 569 74.5
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.1e-245 853.2 569 75.0
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.5e-245 852.0 572 75.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.5e-245 852.0 572 74.7
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.8e-244 848.6 572 74.5
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.8e-244 848.6 572 74.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.7e-244 848.2 572 73.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 6.3e-244 847.4 561 74.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 8.2e-244 847.0 569 74.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.1e-243 846.7 567 74.8
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.8e-243 845.9 569 74.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.1e-243 844.7 569 74.2
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 5.3e-243 844.3 572 73.3
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 6.9e-243 844.0 553 76.1
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.2e-242 843.2 569 73.6
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.2e-242 843.2 573 73.3
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.0e-242 842.4 577 73.1
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.0e-242 842.4 572 73.3
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.4e-242 841.6 573 73.1
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.7e-241 839.3 572 73.8
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.7e-241 839.3 567 74.6
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.7e-241 839.3 569 73.6
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.7e-241 839.3 569 73.6
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 2.9e-241 838.6 572 72.9
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 6.5e-241 837.4 569 72.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 6.5e-241 837.4 569 73.8
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.4e-240 836.3 589 71.6
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 7.2e-240 833.9 573 72.9
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 2.1e-239 832.4 570 72.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.7e-239 832.0 559 73.7
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.6e-239 831.6 572 72.9
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 4.7e-239 831.2 560 73.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.0e-238 830.1 569 72.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.0e-238 830.1 570 72.5
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.3e-238 828.9 572 72.9
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.0e-238 828.6 569 73.3
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 6.7e-238 827.4 572 71.3
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-237 826.2 569 73.1
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.6e-237 825.5 572 71.9
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.7e-237 824.3 572 72.0
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.3e-236 823.2 572 71.0
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 2.2e-236 822.4 563 72.3
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.2e-236 822.4 569 73.1
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 4.8e-236 821.2 569 71.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.8e-236 821.2 562 72.2
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.4e-235 818.9 570 72.3
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 4.1e-235 818.1 572 71.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 9.1e-235 817.0 569 71.5
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.7e-233 812.8 550 73.6
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.9e-233 812.0 569 70.1
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 6.5e-233 810.8 587 69.5
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.9e-232 809.3 572 70.1
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.9e-232 809.3 536 75.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 4.2e-232 808.1 559 71.4
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.1e-231 805.8 572 70.8
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 8.0e-231 803.9 550 71.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.3e-230 802.4 572 69.6
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.7e-230 800.8 572 70.5
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 2.0e-229 799.3 569 69.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.6e-229 798.9 587 68.1
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.3e-228 796.6 526 74.7
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 6.3e-228 794.3 555 70.5
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 8.2e-228 793.9 599 67.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.1e-227 793.5 563 69.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-227 793.5 575 69.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.8e-227 792.7 572 69.6
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.6e-226 789.6 554 70.8
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.6e-226 789.6 574 69.0
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 3.5e-226 788.5 572 68.5
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-225 786.9 574 69.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 2.2e-225 785.8 574 68.1
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 6.5e-225 784.3 573 68.6
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 6.5e-225 784.3 573 69.5
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.6e-223 779.6 545 71.2
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.7e-223 778.1 573 67.7
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 6.1e-223 777.7 570 70.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 6.1e-223 777.7 573 69.3
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.3e-222 775.8 573 68.2
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.0e-222 775.0 572 68.2
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 6.3e-220 767.7 615 66.2
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 4.1e-219 765.0 577 66.7
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.2e-216 755.0 561 67.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 7.2e-216 754.2 561 67.4
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.2e-215 753.4 563 68.0
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.6e-215 751.9 555 67.6
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 4.4e-213 745.0 558 67.0
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 8.3e-212 740.7 615 62.9
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 2.4e-211 739.2 575 65.4
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.1e-211 738.8 575 65.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 7.0e-211 737.6 503 72.4
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-204 716.5 572 64.9
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.7e-204 716.5 499 70.1
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.8e-202 707.6 558 65.4
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 6.1e-199 698.0 566 63.3
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-196 690.3 557 60.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.4e-195 686.0 558 64.0
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 7.0e-195 684.5 460 73.0
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.3e-188 661.0 578 60.0
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.3e-185 652.9 554 58.8
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.8e-178 627.9 558 55.4
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 9.3e-171 604.4 404 75.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.9e-168 596.7 404 72.8
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.3e-168 594.7 445 67.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.2e-165 587.4 559 54.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 9.3e-163 577.8 568 54.2
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.5e-157 560.5 404 69.8
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 9.3e-155 551.2 499 54.3
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.2e-154 550.8 335 80.9
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 4.5e-141 505.8 335 74.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 7.4e-128 461.8 308 74.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.7e-127 460.7 305 74.4
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.9e-121 439.5 352 63.9
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.8e-118 430.6 336 64.3
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.7e-116 424.1 246 85.4
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.7e-114 416.8 288 70.8
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-105 388.3 283 69.3
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 4.0e-105 386.3 285 69.1
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.4e-94 349.4 238 73.5
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.0e-92 342.8 229 75.1
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 4.9e-79 299.7 259 59.1
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.6e-77 294.7 253 62.1
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 3.6e-50 203.8 140 71.4
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-48 198.7 180 57.8
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-48 198.7 137 70.8
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 9.9e-48 195.7 138 69.6
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.8e-47 193.7 139 69.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.2e-46 190.3 139 67.6
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.9e-43 181.4 128 70.3
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 3.7e-34 150.6 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 3.4e-32 144.1 116 62.1
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 9.0e-25 119.4 107 57.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 7.2e-22 109.8 63 77.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-21 109.0 63 76.2
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.6e-21 108.6 62 75.8
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 4.6e-21 107.1 63 74.6
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 7.9e-21 106.3 63 74.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 2.9e-15 87.8 243 26.3
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-15 87.8 63 68.3
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.8e-15 87.4 63 68.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.1e-14 85.9 73 58.9
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.9e-14 85.1 502 24.1
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 6.1e-13 80.1 50 72.0


User provided reference genes

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