Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.3e-207 725.3 361 100.0
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.9e-137 493.0 401 67.3
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 3.2e-137 492.3 397 68.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.5e-134 483.4 391 68.8
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.0e-134 483.0 399 65.9
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.7e-133 479.9 400 67.0
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.7e-133 478.8 399 66.4
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.7e-133 478.8 393 66.4
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.7e-133 478.8 393 66.4
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 6.3e-133 478.0 393 66.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.1e-132 477.2 405 64.7
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 2.2e-130 469.5 313 77.0
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 2.5e-129 466.1 397 65.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.5e-123 445.3 316 71.2
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.5e-121 440.3 318 71.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.9e-121 439.9 320 70.0
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 5.6e-121 438.3 317 71.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.2e-120 437.2 337 66.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.8e-120 436.0 319 69.6
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.6e-120 435.6 313 68.7
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 3.6e-120 435.6 319 69.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.7e-120 435.3 319 68.7
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 8.0e-120 434.5 319 70.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.4e-119 433.7 308 71.1
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 5.2e-119 431.8 316 71.2
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 6.8e-119 431.4 310 69.7
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 8.9e-119 431.0 319 68.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.5e-118 430.3 322 67.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.0e-118 429.9 315 67.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.6e-118 429.5 322 67.1
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 5.7e-118 428.3 318 68.9
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 5.7e-118 428.3 315 69.2
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.3e-117 427.2 315 67.9
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.7e-117 426.8 322 66.1
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.9e-117 426.0 344 65.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 3.7e-117 425.6 302 69.9
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.1e-116 424.1 320 67.8
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.1e-116 424.1 320 67.2
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.4e-116 423.7 309 69.3
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.6e-115 420.2 339 64.0
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.5e-115 419.1 308 70.1
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 4.6e-115 418.7 315 67.0
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 4.6e-115 418.7 306 68.0
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 5.9e-115 418.3 302 67.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.3e-114 417.2 306 69.3
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.3e-114 416.4 322 65.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.9e-114 415.6 296 67.9
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.0e-114 415.2 302 66.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.6e-114 414.8 324 65.7
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 8.6e-114 414.5 310 68.7
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 8.6e-114 414.5 310 68.7
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.6e-114 414.5 322 65.8
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.1e-113 414.1 312 67.9
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.3e-113 412.5 271 74.2
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.3e-113 412.1 321 66.0
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.5e-113 411.0 296 66.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.6e-112 410.2 330 65.5
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 3.6e-112 409.1 310 66.5
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 6.2e-112 408.3 374 59.6
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.4e-111 407.1 297 70.7
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.3e-111 406.4 321 62.9
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.2e-111 405.2 291 67.4
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 8.9e-111 404.4 314 65.3
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.5e-110 403.7 356 61.0
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 5.8e-110 401.7 247 76.9
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 9.8e-110 401.0 301 66.8
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 6.4e-109 398.3 294 67.7
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.2e-108 396.0 324 63.3
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 7.0e-108 394.8 302 64.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 9.2e-108 394.4 257 73.2
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 4.6e-107 392.1 311 63.3
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.3e-106 389.8 242 76.4
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.0e-106 389.4 313 65.2
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.1e-105 387.5 379 57.5
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.1e-104 383.3 333 59.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.7e-104 382.1 321 59.8
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 6.2e-104 381.7 308 63.6
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 2.3e-103 379.8 344 57.6
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 4.0e-103 379.0 325 61.2
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.0e-102 376.7 316 63.3
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.4e-102 375.6 345 58.3
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 4.4e-102 375.6 346 58.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 9.8e-102 374.4 304 62.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.9e-101 372.9 302 62.3
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.9e-100 370.2 322 59.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.0e-94 350.1 321 58.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.4e-94 349.4 233 70.0
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.9e-93 345.5 233 69.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.4e-92 343.2 326 57.4
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 4.1e-92 342.4 344 57.8
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 9.2e-92 341.3 299 60.9
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 7.8e-91 338.2 332 56.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 8.6e-90 334.7 191 80.6
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.3e-89 332.4 230 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 3.2e-84 316.2 330 50.3
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 9.3e-84 314.7 253 60.9
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 3.0e-82 309.7 258 61.6
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.9e-81 307.0 281 54.4
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.4e-79 300.8 188 77.1
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.0e-79 298.1 316 50.0
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 9.6e-73 278.1 351 43.6
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.2e-70 271.2 379 42.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 2.9e-69 266.5 196 61.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.4e-62 243.0 317 48.3
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 3.2e-60 236.5 228 49.6
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.3e-56 224.6 130 75.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 4.8e-56 222.6 290 46.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.6e-51 206.5 122 79.5
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.2e-48 197.2 211 51.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 5.9e-46 189.1 162 57.4
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 5.5e-44 182.6 110 80.9
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 6.1e-43 179.1 114 78.1
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 2.8e-40 170.2 187 51.3
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.5e-36 156.0 97 77.3
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 2.7e-35 153.7 270 37.8
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.9e-35 152.1 178 51.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 9.7e-33 145.2 181 40.3
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.5e-30 136.3 171 49.7
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.6e-27 127.9 62 87.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.7e-24 116.7 339 26.8
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.9e-21 107.1 56 78.6
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 9.4e-20 102.1 97 57.7
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 4.4e-17 93.2 73 67.1
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-16 91.3 87 59.8
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 6.3e-16 89.4 181 35.9
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.2e-14 85.1 61 75.4
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-13 81.3 61 68.9
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.3e-13 80.9 133 39.1
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 6.5e-13 79.3 78 53.8
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.5e-12 77.4 183 36.1
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 5.5e-12 76.3 133 38.3
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.8e-11 73.9 50 72.0
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.3e-10 70.9 109 39.4
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 4.4e-09 66.6 42 73.8
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.2e-07 58.9 40 70.0
SHI03914 Sapria himalayana HOM05D000616 ORTHO05D000233 5.9e-06 56.2 88 39.8


User provided reference genes

Program Settings