Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 5.3e-259 897.1 437 100.0
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.0e-229 798.9 421 91.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 4.8e-228 794.3 436 88.5
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.2e-226 789.6 428 88.8
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 4.5e-226 787.7 424 89.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-225 786.6 424 88.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 3.8e-225 784.6 421 89.1
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 8.5e-225 783.5 423 88.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 8.5e-225 783.5 423 88.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 3.2e-224 781.6 421 88.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 5.5e-224 780.8 422 88.4
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.7e-223 778.5 420 88.1
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.7e-223 778.5 420 88.1
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 4.7e-215 751.1 423 84.9
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-204 715.3 428 79.7
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.8e-203 712.6 428 79.2
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.5e-202 708.0 438 77.9
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 7.8e-202 707.2 439 76.5
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.3e-201 706.4 433 77.4
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 2.9e-201 705.3 425 77.6
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 6.6e-201 704.1 416 79.6
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.6e-199 699.5 433 76.7
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.8e-199 698.7 446 75.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 3.6e-199 698.4 413 79.4
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 6.1e-199 697.6 427 79.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.8e-198 696.0 439 74.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 4.0e-198 694.9 425 78.4
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.2e-198 694.5 437 76.2
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 5.2e-198 694.5 428 76.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 6.8e-198 694.1 449 75.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.2e-197 693.3 431 77.5
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.2e-197 693.3 429 76.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.5e-197 693.0 437 75.5
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.0e-197 692.6 412 78.2
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.6e-197 692.2 431 76.1
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 5.8e-197 691.0 434 75.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.7e-196 689.5 435 76.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.7e-196 688.3 428 77.1
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 4.9e-196 688.0 429 77.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.4e-196 687.6 435 75.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.9e-195 686.0 428 76.6
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.4e-195 685.6 428 76.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.2e-195 685.3 415 78.8
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 5.4e-195 684.5 428 76.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.4e-195 684.5 439 75.2
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.2e-195 683.7 414 77.5
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.6e-194 682.9 433 76.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.6e-194 682.9 428 76.4
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.6e-194 682.9 447 74.0
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.0e-194 682.6 435 74.5
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 2.7e-194 682.2 427 76.6
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 2.7e-194 682.2 413 77.5
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.7e-194 682.2 429 76.5
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 2.7e-194 682.2 428 76.2
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.5e-194 681.8 416 76.7
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 4.6e-194 681.4 429 76.0
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 6.0e-194 681.0 427 75.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 7.8e-194 680.6 424 76.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-193 680.2 431 75.2
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.0e-193 680.2 411 77.4
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.3e-193 679.9 423 78.7
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.3e-193 679.9 445 74.2
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.3e-193 679.1 439 74.3
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.3e-193 679.1 424 77.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 5.0e-193 677.9 437 73.5
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 6.6e-193 677.6 428 75.2
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 8.6e-193 677.2 431 75.6
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.1e-192 676.8 474 70.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.5e-192 676.4 428 75.9
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.5e-192 676.4 433 74.1
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.5e-192 675.6 433 74.1
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 3.3e-192 675.2 427 75.9
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.3e-192 674.9 433 73.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.6e-192 674.5 430 75.3
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.1e-190 670.2 435 73.8
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.4e-190 669.8 409 77.5
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.8e-190 669.5 433 75.1
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 5.2e-190 667.9 429 76.2
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 5.2e-190 667.9 428 75.9
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 6.8e-190 667.5 412 79.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 6.8e-190 667.5 440 72.3
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 6.8e-190 667.5 434 74.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 6.8e-190 667.5 430 74.7
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 3.7e-188 661.8 405 76.8
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 8.3e-188 660.6 427 74.0
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.9e-187 659.4 410 76.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 4.1e-187 658.3 423 74.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 2.7e-186 655.6 413 74.1
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.9e-185 651.7 410 75.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.5e-184 649.0 431 74.0
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.5e-184 649.0 379 80.7
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 3.6e-183 645.2 414 74.6
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.7e-180 635.2 405 78.0
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.9e-180 634.8 379 77.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.9e-180 634.8 442 69.9
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.3e-180 634.0 424 72.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.9e-177 625.2 415 73.3
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.5e-176 623.2 426 70.2
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.5e-170 602.1 398 72.4
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.2e-167 593.6 432 68.8
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 8.1e-167 590.9 441 68.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 2.4e-166 589.3 408 71.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.4e-165 585.5 379 73.4
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 2.2e-164 582.8 432 64.4
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 4.8e-159 565.1 395 68.9
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 3.1e-158 562.4 345 75.7
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 5.8e-157 558.1 451 59.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 7.6e-157 557.8 432 64.6
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 6.2e-151 538.1 382 70.2
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 5.8e-149 531.6 407 63.6
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.3e-144 515.4 293 84.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.3e-144 515.4 293 84.0
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.2e-141 507.3 434 56.9
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 9.3e-139 497.7 331 72.8
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 8.5e-132 474.6 296 77.7
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.5e-125 453.8 260 84.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.9e-123 446.8 286 75.9
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-122 444.1 290 76.9
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 8.8e-121 438.0 271 80.8
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 2.4e-118 429.9 391 54.5
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.5e-117 427.2 261 76.6
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 2.4e-110 403.3 349 59.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.0e-89 333.2 388 44.8
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.9e-84 316.2 238 66.4
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.9e-79 299.3 338 46.7
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.8e-74 283.5 582 33.5
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 7.1e-70 268.9 177 75.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 4.7e-66 256.1 252 51.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.3e-52 210.7 461 33.6
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.2e-45 188.3 110 78.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.1e-36 156.4 112 67.9
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.5e-30 136.3 95 71.6
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.8e-26 124.0 102 59.8
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 6.3e-26 122.9 80 76.2
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.1e-25 122.1 74 81.1
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 1.8e-25 121.3 65 84.6
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.8e-25 121.3 70 81.4
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 5.3e-25 119.8 70 80.0
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 5.3e-25 119.8 70 80.0
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 5.3e-25 119.8 88 69.3
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 6.9e-25 119.4 70 80.0
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 9.0e-25 119.0 71 78.9
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.2e-24 118.6 66 83.3
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.5e-24 118.2 65 81.5
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.5e-24 118.2 70 78.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.6e-24 117.5 70 78.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 9.7e-19 99.0 60 70.0
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.5e-16 91.7 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.2e-14 82.8 69 62.3
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 3.7e-10 70.5 84 46.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.7e-07 61.6 41 70.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 2.9e-07 60.8 42 69.0


User provided reference genes

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