Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.2e-92 343.2 178 100.0
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 1.8e-56 223.0 179 63.1
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 2.0e-55 219.5 176 61.9
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 5.8e-55 218.0 179 62.0
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.3e-54 216.9 176 61.4
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.3e-54 216.9 176 63.1
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 2.9e-54 215.7 179 59.8
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 3.8e-54 215.3 179 59.8
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 8.4e-54 214.2 179 59.8
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 1.1e-53 213.8 179 59.2
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 1.1e-53 213.8 179 59.2
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 1.1e-53 213.8 179 59.2
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 9.3e-53 210.7 179 58.7
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 4.3e-50 201.8 177 55.9
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 7.4e-50 201.1 164 61.0
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 2.8e-49 199.1 177 55.9
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 8.1e-49 197.6 177 55.4
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 8.1e-49 197.6 177 55.4
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 8.1e-49 197.6 177 55.4
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 1.4e-48 196.8 177 55.4
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.0e-39 166.4 178 51.1
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.6e-39 166.0 178 51.1
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.4e-39 165.6 178 51.7
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.8e-38 162.2 178 50.6
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.1e-32 142.1 178 44.9
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 3.8e-30 135.6 175 45.1
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 5.5e-29 131.7 175 42.9
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 2.7e-28 129.4 175 42.3
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 3.6e-28 129.0 175 42.3
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 6.1e-28 128.3 175 41.7
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 5.1e-27 125.2 175 41.1
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 1.1e-26 124.0 175 41.7
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 2.5e-26 122.9 171 42.7
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 2.5e-26 122.9 171 42.7
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 2.5e-26 122.9 171 42.7
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 2.5e-26 122.9 171 42.7
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 1.7e-25 120.2 169 42.6
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 2.2e-25 119.8 169 42.0
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.2e-25 119.8 183 42.1
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 4.8e-25 118.6 163 44.2
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-22 110.9 176 38.6
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 4.2e-21 105.5 176 38.1
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 3.6e-20 102.4 183 34.4
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.0e-19 99.4 183 36.6
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.1e-18 97.4 181 35.9
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 3.3e-18 95.9 176 35.8
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 3.1e-16 89.4 164 35.4
Nitab4.5_0000035g0080 Nicotiana tabacum HOM05D003146 ORTHO05D001819 6.9e-16 88.2 163 35.0
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.0e-14 84.3 166 34.3
Peaxi162Scf00126g00017 Petunia axillaris HOM05D003146 ORTHO05D001819 6.5e-14 81.6 172 34.9
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 1.1e-13 80.9 171 31.0
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 3.2e-13 79.3 132 36.4
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.4e-13 77.8 159 32.1
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.7e-12 76.3 159 33.3
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.6e-12 75.9 159 32.7
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 4.7e-12 75.5 144 34.0
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 4.7e-12 75.5 144 34.0
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 6.1e-12 75.1 144 34.0
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 6.1e-12 75.1 164 31.1
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.1e-12 75.1 168 30.4
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 6.1e-12 75.1 157 31.8
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.0e-11 74.3 160 32.5
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.0e-11 74.3 160 32.5
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-11 73.9 159 32.1
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-11 73.9 170 30.6
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 1.4e-11 73.9 172 31.4
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-11 73.6 168 29.8
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 2.3e-11 73.2 154 33.1
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-11 73.2 160 31.9
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-11 73.2 160 31.9
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 3.0e-11 72.8 168 29.2
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.0e-11 72.8 157 30.6
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 3.9e-11 72.4 168 31.5
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-10 70.9 166 30.1
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.1e-10 70.9 169 30.8
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-10 70.5 168 30.4
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-10 70.1 159 27.7
Psat3g149840 Pisum sativum HOM05D007995 ORTHO05D001819 2.0e-10 70.1 166 31.3
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.6e-10 69.7 159 30.8
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 159 30.2
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 168 30.4
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 161 30.4
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 140 32.1
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 5.7e-10 68.6 171 28.1
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.4e-10 68.2 168 29.8
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.7e-10 67.8 173 30.6
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-09 66.6 164 29.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-09 66.6 164 29.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-09 66.6 164 29.3
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 2.2e-09 66.6 164 30.5
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.8e-09 66.2 174 28.2
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 2.8e-09 66.2 171 27.5
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-09 65.9 164 29.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-09 65.9 164 29.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-09 65.9 164 29.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-09 65.9 164 29.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-09 65.9 164 29.3
DCAR_030436 Daucus carota HOM05D003146 ORTHO05D001819 3.7e-09 65.9 151 30.5
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.8e-09 65.5 165 28.5
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 6.3e-09 65.1 171 28.7
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 8.2e-09 64.7 172 31.4
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-08 64.3 175 32.0
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-08 63.9 173 30.1
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.4e-08 63.2 178 29.2
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.4e-08 63.2 170 31.2
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.1e-08 62.4 132 30.3
Lalb_Chr16g0386201 Lupinus albus HOM05D007995 ORTHO05D001819 4.1e-08 62.4 136 33.8
Lalb_Chr16g0386221 Lupinus albus HOM05D007995 ORTHO05D001819 5.3e-08 62.0 136 33.1
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 7.0e-08 61.6 134 32.1
TPR.G30439 Trifolium pratense HOM05D007995 ORTHO05D001819 7.0e-08 61.6 136 30.1
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 9.1e-08 61.2 171 28.7
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 1.6e-07 60.5 174 27.6
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 1.6e-07 60.5 136 31.6
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-07 60.5 116 30.2
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 1.6e-07 60.5 145 29.0
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 2.6e-07 59.7 174 28.7
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 2.6e-07 59.7 145 29.0
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 3.5e-07 59.3 174 27.0
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 3.5e-07 59.3 174 27.0
Medtr6g024040 Medicago truncatula HOM05D007995 ORTHO05D001819 3.5e-07 59.3 177 25.4
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 4.5e-07 58.9 142 31.0
Ca_31346_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 5.9e-07 58.5 137 30.7
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 5.9e-07 58.5 143 31.5
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 7.7e-07 58.2 173 27.7
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 7.7e-07 58.2 174 27.6
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 7.7e-07 58.2 171 26.9
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 7.7e-07 58.2 146 29.5
AL1G54520 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.0e-06 57.8 114 32.5
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-06 57.8 126 30.2
PSO384G1724 Papaver somniferum HOM05D001445 ORTHO05D001261 1.0e-06 57.8 140 30.7
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 1.3e-06 57.4 174 28.2
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 1.3e-06 57.4 176 27.8
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 1.3e-06 57.4 174 28.2
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 1.3e-06 57.4 174 28.2
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 1.3e-06 57.4 176 27.8
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 1.7e-06 57.0 174 28.2
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 1.7e-06 57.0 164 26.8
Ca_31352_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.7e-06 57.0 137 30.7
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.7e-06 57.0 136 28.7
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.7e-06 57.0 145 27.6
BcaB04g17494 Brassica carinata HOM05D003146 ORTHO05D001819 2.2e-06 56.6 76 36.8
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-06 56.6 109 29.4
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 2.9e-06 56.2 172 29.1
AT3G27999 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 3.8e-06 55.8 178 27.5
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.8e-06 55.8 126 29.4
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.8e-06 55.8 115 32.2
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.8e-06 55.8 115 32.2
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 5.0e-06 55.5 158 27.8
Lalb_Chr22g0356001 Lupinus albus HOM05D007995 ORTHO05D001819 5.0e-06 55.5 133 29.3
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.0e-06 55.5 174 30.5
Carub.0001s1211 Capsella rubella HOM05D008385 ORTHO05D010806 6.5e-06 55.1 180 30.0
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 8.5e-06 54.7 173 27.2


User provided reference genes

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