Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.3e-154 548.9 288 100.0
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.0e-141 506.9 294 89.8
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.0e-141 505.4 294 89.8
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.5e-140 502.3 294 89.1
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 9.5e-140 500.4 294 88.8
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.1e-139 499.2 294 88.8
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.6e-139 498.4 294 88.4
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.0e-138 495.0 294 87.8
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 8.9e-138 493.8 294 87.8
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.6e-137 492.3 306 84.6
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.6e-137 492.3 306 84.6
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-136 489.2 306 84.3
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 5.6e-132 474.6 305 82.6
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.7e-125 453.0 296 81.1
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.3e-125 452.6 297 81.1
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.3e-124 448.4 291 82.5
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.8e-122 443.0 290 82.4
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.0e-121 439.5 294 79.9
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 3.4e-121 438.7 294 76.9
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.4e-121 438.3 294 79.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.7e-120 436.4 294 75.9
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.1e-119 433.7 295 75.3
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.4e-119 433.3 294 79.6
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 3.2e-119 432.2 295 75.6
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 3.2e-119 432.2 295 75.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 4.1e-119 431.8 294 75.9
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 4.1e-119 431.8 294 77.2
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.6e-118 429.9 294 75.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.6e-118 429.9 293 77.5
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 3.5e-118 428.7 294 75.2
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 6.0e-118 427.9 294 78.2
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 6.0e-118 427.9 294 75.5
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 6.0e-118 427.9 294 77.6
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 6.0e-118 427.9 295 75.9
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 7.8e-118 427.6 294 75.5
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.3e-117 426.8 294 75.5
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.7e-117 426.4 291 76.6
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 2.3e-117 426.0 294 76.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.3e-117 426.0 295 74.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.6e-117 424.5 295 73.6
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.6e-117 424.5 295 73.6
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.5e-116 423.3 294 74.5
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.9e-116 422.9 294 73.8
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.9e-116 422.9 294 73.5
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.5e-116 422.5 291 77.7
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 3.3e-116 422.2 294 74.1
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.3e-116 421.0 311 74.0
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 9.6e-116 420.6 294 75.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 9.6e-116 420.6 294 73.1
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.6e-115 419.9 294 75.5
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.1e-115 419.5 294 73.8
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.6e-115 418.7 293 76.5
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 6.2e-115 417.9 296 72.6
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.1e-114 417.2 295 73.9
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.8e-114 416.4 295 74.2
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 3.1e-114 415.6 294 73.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.0e-114 415.2 294 73.8
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 5.2e-114 414.8 293 75.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.2e-114 414.8 295 73.2
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-113 413.7 292 75.0
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.6e-113 412.5 291 74.2
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 4.4e-113 411.8 295 72.2
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.9e-113 410.6 320 68.8
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 9.9e-113 410.6 294 72.4
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 9.9e-113 410.6 296 72.6
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.7e-112 409.8 294 71.8
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.8e-112 408.7 289 75.1
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 8.4e-112 407.5 324 66.4
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.1e-111 407.1 292 73.3
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.2e-111 405.6 283 75.6
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 5.4e-111 404.8 295 71.5
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.1e-110 402.9 284 75.0
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.1e-110 402.9 295 71.5
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.5e-110 402.1 317 67.2
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 6.0e-110 401.4 292 68.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.3e-109 399.4 333 66.7
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.9e-109 398.7 328 67.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.9e-108 396.4 290 69.3
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 4.3e-108 395.2 294 69.4
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 4.3e-108 395.2 289 70.2
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 7.3e-108 394.4 292 70.2
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.3e-107 393.7 292 68.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.6e-107 393.3 289 69.9
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.6e-107 393.3 295 68.1
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.1e-107 392.9 295 68.5
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.1e-107 392.9 292 69.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 8.1e-107 391.0 294 69.4
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.1e-106 390.6 298 67.4
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.8e-106 389.8 329 66.3
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 5.3e-106 388.3 292 67.8
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.2e-104 382.9 295 66.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.9e-104 381.7 297 65.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 7.1e-103 377.9 296 65.9
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.2e-102 377.1 280 70.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.2e-102 377.1 294 67.3
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 7.9e-102 374.4 294 66.7
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.9e-102 374.4 294 70.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.3e-101 372.9 292 66.8
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.5e-100 369.4 321 62.0
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.6e-99 366.7 352 54.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.8e-98 363.2 295 67.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.3e-96 357.1 297 62.0
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.7e-96 356.7 298 64.4
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.2e-95 352.1 229 77.3
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.3e-93 347.1 271 66.4
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.3e-93 346.3 229 76.4
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.9e-93 345.5 295 64.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 8.7e-93 344.4 295 63.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.6e-92 341.7 294 60.5
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.1e-91 339.7 268 67.9
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.8e-91 339.3 233 72.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 9.0e-90 334.3 287 62.7
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.2e-89 334.0 301 59.8
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.3e-88 330.5 230 71.7
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.9e-88 328.6 295 62.7
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 6.5e-88 328.2 313 59.7
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.3e-85 320.5 289 63.3
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 7.4e-84 314.7 196 80.6
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.1e-82 309.3 294 59.2
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.2e-80 303.1 196 76.0
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 3.2e-79 299.3 307 54.1
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 4.2e-79 298.9 277 64.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.3e-77 293.1 291 54.6
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.5e-76 290.4 299 54.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.7e-75 285.8 291 56.7
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.3e-75 285.0 292 55.8
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.9e-73 278.5 250 60.8
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.5e-72 275.0 273 54.2
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.5e-71 271.9 217 68.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.2e-71 271.6 282 53.9
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.8e-69 266.9 295 51.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 2.3e-69 266.5 363 44.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 3.7e-67 259.2 205 66.3
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.4e-66 257.3 206 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 5.9e-65 251.9 223 57.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.3e-64 250.8 284 52.8
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.9e-64 249.6 290 51.0
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 3.9e-61 239.2 204 64.7
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.9e-61 239.2 323 46.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.1e-60 237.7 317 42.9
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.7e-57 224.9 193 60.1
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.2e-54 217.6 179 65.9
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.6e-49 200.7 333 39.6
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.2e-43 180.3 113 77.9
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.8e-43 179.1 326 36.5
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 4.9e-35 152.5 90 82.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.7e-32 144.1 90 76.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 8.0e-30 135.2 307 33.9
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 5.2e-29 132.5 227 41.9
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 4.1e-26 122.9 262 37.4
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.2e-25 121.3 84 65.5
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.8e-20 102.4 100 61.0
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.4e-18 97.8 60 75.0
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 4.1e-18 96.3 63 73.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 6.0e-17 92.4 327 28.4
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 7.8e-17 92.0 80 65.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.4e-13 81.3 142 40.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.5e-07 61.2 42 64.3
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.3e-07 58.9 38 65.8


User provided reference genes

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