Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036221 Chenopodium quinoa HOM05D002376 ORTHO05D004654 1.0e-246 856.3 422 100.0
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 2.8e-204 715.3 422 85.5
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 9.0e-139 497.7 427 62.3
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 1.9e-75 287.3 527 38.0
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.2e-47 194.9 488 32.6
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 3.6e-47 193.4 185 54.1
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 2.0e-45 187.6 161 60.9
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 2.0e-45 187.6 112 75.0
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 2.0e-45 187.6 112 75.0
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 5.8e-45 186.0 427 34.9
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 5.8e-45 186.0 125 70.4
PGSC0003DMG400020864 Solanum tuberosum HOM05D002376 ORTHO05D004654 1.7e-44 184.5 136 64.7
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 2.2e-44 184.1 486 33.1
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 2.9e-44 183.7 238 47.5
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 2.9e-44 183.7 159 59.7
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 2.9e-44 183.7 162 59.9
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 3.8e-44 183.3 168 57.1
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 8.4e-44 182.2 176 54.0
ECA248G1568 Erigeron canadensis HOM05D002376 ORTHO05D004654 8.4e-44 182.2 141 64.5
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 1.4e-43 181.4 154 59.1
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.4e-43 181.4 152 58.6
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 1.4e-43 181.4 147 60.5
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 1.4e-43 181.4 227 48.9
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 1.4e-43 181.4 265 43.0
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 1.9e-43 181.0 174 55.2
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 1.9e-43 181.0 150 62.7
Lsat_1_v5_gn_5_175220 Lactuca sativa HOM05D002376 ORTHO05D004654 1.9e-43 181.0 138 64.5
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 3.2e-43 180.3 122 65.6
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 3.2e-43 180.3 207 47.8
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 7.1e-43 179.1 226 47.8
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 7.1e-43 179.1 128 66.4
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 9.3e-43 178.7 228 47.8
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 9.3e-43 178.7 419 36.5
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 9.3e-43 178.7 140 62.1
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 1.2e-42 178.3 128 67.2
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 1.2e-42 178.3 414 35.5
VMungo0540G1534 Vigna mungo HOM05D002376 ORTHO05D004654 1.6e-42 177.9 146 63.7
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 2.1e-42 177.6 158 56.3
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 2.7e-42 177.2 151 60.3
Phvul.006G076300 Phaseolus vulgaris HOM05D002376 ORTHO05D004654 2.7e-42 177.2 146 63.7
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 2.7e-42 177.2 133 65.4
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 3.5e-42 176.8 122 68.0
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 4.6e-42 176.4 128 66.4
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 4.6e-42 176.4 174 52.9
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 6.0e-42 176.0 130 65.4
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 6.0e-42 176.0 160 57.5
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 1.0e-41 175.3 162 55.6
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 1.0e-41 175.3 198 49.0
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.0e-41 175.3 163 55.8
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 1.0e-41 175.3 130 64.6
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 1.7e-41 174.5 151 58.9
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.3e-41 174.1 148 60.1
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 2.3e-41 174.1 129 62.8
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 3.0e-41 173.7 153 58.8
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 3.9e-41 173.3 139 61.2
Manes.18G137600 Manihot esculenta HOM05D002376 ORTHO05D004654 5.1e-41 172.9 149 56.4
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 6.6e-41 172.6 140 60.0
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.7e-41 172.2 165 55.8
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.7e-41 172.2 165 55.8
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 8.7e-41 172.2 165 55.8
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 8.7e-41 172.2 422 35.8
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 8.7e-41 172.2 147 56.5
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 1.1e-40 171.8 165 53.3
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 1.1e-40 171.8 144 63.9
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.1e-40 171.8 423 34.5
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.5e-40 171.4 165 55.8
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 1.9e-40 171.0 141 58.9
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.5e-40 170.6 423 34.8
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 3.3e-40 170.2 423 35.0
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 4.3e-40 169.9 424 34.9
Thecc.10G043800 Theobroma cacao HOM05D002376 ORTHO05D004654 4.3e-40 169.9 160 57.5
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 4.3e-40 169.9 196 46.4
CsaV3_1G036670 Cucumis sativus L. HOM05D002376 ORTHO05D004654 9.6e-40 168.7 160 55.0
Gorai.013G272400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.6e-40 168.7 165 55.8
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.3e-39 168.3 182 51.6
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 1.3e-39 168.3 137 59.1
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 1.3e-39 168.3 420 35.0
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 1.3e-39 168.3 153 58.2
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 1.6e-39 167.9 123 62.6
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-39 167.9 130 60.8
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 1.6e-39 167.9 155 54.8
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 2.1e-39 167.5 150 54.7
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 2.8e-39 167.2 212 46.2
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 2.8e-39 167.2 121 63.6
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 3.6e-39 166.8 121 62.0
Cfa011807 Carpinus fangiana HOM05D002376 ORTHO05D004654 4.8e-39 166.4 146 58.2
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 6.2e-39 166.0 174 48.9
Hma1.2p1_2270F.1_g318510 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 6.2e-39 166.0 154 55.8
Glyma.11G161200 Glycine max HOM05D002376 ORTHO05D004654 8.1e-39 165.6 133 66.2
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-38 165.2 121 61.2
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-38 165.2 121 61.2
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 1.8e-38 164.5 172 52.9
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 2.4e-38 164.1 150 54.7
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 3.1e-38 163.7 121 61.2
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 3.1e-38 163.7 213 46.5
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 5.3e-38 162.9 139 59.7
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 6.9e-38 162.5 139 58.3
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 6.9e-38 162.5 139 58.3
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 1.2e-37 161.8 146 56.8
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 1.5e-37 161.4 107 69.2
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 1.5e-37 161.4 163 54.6
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 1.5e-37 161.4 114 64.9
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 2.6e-37 160.6 114 64.0
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 2.6e-37 160.6 177 49.7
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 2.6e-37 160.6 128 57.8
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 3.4e-37 160.2 121 60.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 5.8e-37 159.5 190 47.4
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 7.6e-37 159.1 215 45.1
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 2.2e-36 157.5 128 57.8
arahy.Tifrunner.gnm1.ann1.D8LDTS Arachis hypogaea HOM05D002376 ORTHO05D004654 1.4e-35 154.8 294 39.1
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 1.4e-35 154.8 158 51.3
C04p59230 Brassica napus HOM05D002376 ORTHO05D004654 7.1e-35 152.5 167 48.5
Prupe.1G106000 Prunus persica HOM05D002376 ORTHO05D004654 1.2e-34 151.8 170 52.4
A03p02950 Brassica napus HOM05D002376 ORTHO05D004654 4.6e-34 149.8 104 65.4
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 5.1e-33 146.4 85 77.6
SHI19259 Sapria himalayana HOM05D002376 ORTHO05D004654 2.8e-31 140.6 170 43.5
Gohir.1Z049465 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-30 138.7 167 50.3
Gohir.A08G000016 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-30 138.7 167 50.3
Gorai.005G269000 Gossypium raimondii HOM05D002376 ORTHO05D004654 2.6e-29 134.0 144 53.5
BcaC02g08029 Brassica carinata HOM05D002376 ORTHO05D004654 2.9e-28 130.6 126 55.6
CBR_g20119 Chara braunii HOM05D002376 ORTHO05D004654 8.4e-28 129.0 132 50.8
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 1.1e-27 128.6 161 42.9
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.3e-27 125.6 147 50.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.3e-27 125.6 147 50.3
Nn5g26910 Nelumbo nucifera HOM05D002376 ORTHO05D004654 1.6e-26 124.8 199 44.7
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 2.1e-26 124.4 86 68.6
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 6.0e-26 122.9 237 34.6
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 6.7e-25 119.4 109 56.9
BolC9t57873H Brassica oleracea HOM05D002376 ORTHO05D004654 8.7e-25 119.0 109 56.9
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 4.3e-24 116.7 78 67.9
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.6e-24 115.5 90 60.0
Prupe.1G108400 Prunus persica HOM05D002376 ORTHO05D004654 9.6e-24 115.5 128 53.1
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 6.2e-23 112.8 138 43.5
SEGI_39190 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 6.2e-23 112.8 118 52.5
Gohir.1Z049334 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.6e-21 107.5 166 42.2
SEGI_33829 Sequoiadendron giganteum HOM05D002376 ORTHO05D004654 2.6e-21 107.5 84 60.7
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 5.8e-21 106.3 248 31.9
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 3.8e-20 103.6 157 36.9
Gorai.010G000700 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.2e-18 98.6 135 45.9
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 5.7e-16 89.7 153 35.3
MCO16G118 Micromonas commoda HOM05D002376 ORTHO05D004654 8.2e-15 85.9 136 41.2
BcaC02g08132 Brassica carinata HOM05D002376 ORTHO05D004654 1.2e-13 82.0 92 52.2
BolC4t27329H Brassica oleracea HOM05D002376 ORTHO05D004654 1.2e-13 82.0 92 52.2
C07p50650 Brassica napus HOM05D002376 ORTHO05D004654 4.5e-13 80.1 91 51.6
BolC7t45569H Brassica oleracea HOM05D002376 ORTHO05D004654 4.5e-13 80.1 91 51.6
C02p16040 Brassica napus HOM05D002376 ORTHO05D004654 5.9e-13 79.7 91 51.6
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.0e-12 79.0 133 37.6
CiPaw.14G052300 Carya illinoinensis HOM05D002376 ORTHO05D004654 1.7e-12 78.2 194 32.0
Prupe.3G073500 Prunus persica HOM05D002376 ORTHO05D004654 2.9e-12 77.4 61 63.9
arahy.Tifrunner.gnm1.ann1.P4WV5Z Arachis hypogaea HOM05D000138 ORTHO05D000078 3.8e-12 77.0 46 78.3
Gohir.D13G241500 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-11 75.5 106 46.2
arahy.Tifrunner.gnm1.ann1.ANYB6V Arachis hypogaea HOM05D002376 ORTHO05D004654 1.4e-11 75.1 57 61.4
arahy.Tifrunner.gnm1.ann1.D1TE9J Arachis hypogaea HOM05D000138 ORTHO05D000078 1.4e-11 75.1 57 61.4
arahy.Tifrunner.gnm1.ann1.S28F9G Arachis hypogaea HOM05D000138 ORTHO05D000078 1.9e-11 74.7 44 79.5
arahy.Tifrunner.gnm1.ann1.C6LA65 Arachis hypogaea HOM05D002376 ORTHO05D004654 3.2e-11 73.9 46 73.9
BcaC04g19883 Brassica carinata HOM05D002376 ORTHO05D004654 3.2e-11 73.9 48 72.9
arahy.Tifrunner.gnm1.ann1.HWE26N Arachis hypogaea HOM05D002376 ORTHO05D004654 4.6e-10 70.1 44 72.7
Gohir.A02G179401 Gossypium hirsutum HOM05D002376 ORTHO05D036218 7.9e-10 69.3 106 43.4
C09p15830 Brassica napus HOM05D001212 ORTHO05D000246 5.1e-09 66.6 128 38.3
Gohir.D13G241450 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.5e-08 65.1 31 77.4
CDE12G0746 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 9.1e-06 55.8 51 54.9


User provided reference genes

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