Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.7e-262 908.7 425 100.0
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 1.9e-157 559.7 426 65.3
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 5.7e-141 505.0 362 67.4
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 5.4e-99 365.5 370 50.0
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 1.0e-41 175.3 362 32.3
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 5.7e-40 169.5 364 29.1
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.6e-39 167.9 374 29.7
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 2.8e-39 167.2 364 28.3
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 3.7e-39 166.8 362 29.0
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 3.1e-38 163.7 408 31.6
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 6.9e-38 162.5 390 31.0
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 4.5e-37 159.8 427 30.4
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 5.9e-37 159.5 439 29.6
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.7e-36 157.9 381 29.1
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 5.0e-36 156.4 406 31.0
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.5e-36 155.6 374 29.4
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.1e-35 155.2 381 29.1
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 9.4e-35 152.1 380 31.6
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 2.7e-34 150.6 351 30.8
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 3.6e-34 150.2 380 29.7
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 4.6e-34 149.8 380 30.3
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 7.9e-34 149.1 373 29.2
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.8e-33 147.9 383 29.5
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.0e-33 147.1 374 28.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 3.0e-33 147.1 390 28.7
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 5.1e-33 146.4 328 34.8
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 4.3e-32 143.3 254 35.0
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 9.7e-32 142.1 381 30.4
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 9.7e-32 142.1 380 29.2
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.2e-31 139.0 376 27.4
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 1.1e-30 138.7 394 29.7
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 1.4e-30 138.3 385 28.6
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.8e-30 137.9 406 28.8
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.8e-30 137.9 406 29.1
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 3.1e-30 137.1 406 29.3
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.1e-30 137.1 379 29.3
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.5e-29 134.8 372 28.0
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 3.8e-28 130.2 269 33.5
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 5.0e-28 129.8 372 28.8
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 7.9e-26 122.5 224 39.3
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.8e-25 121.3 351 28.2
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 2.3e-25 120.9 386 28.2
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 3.9e-25 120.2 384 27.6
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 4.4e-24 116.7 367 26.7
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 1.3e-23 115.2 390 26.2
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 2.8e-23 114.0 222 36.0
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 3.7e-23 113.6 371 26.4
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 5.3e-22 109.8 352 26.7
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 5.3e-22 109.8 260 32.3
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 7.0e-22 109.4 321 27.4
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 1.5e-21 108.2 264 30.3
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 5.9e-21 106.3 420 25.7
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 3.8e-20 103.6 237 30.0
QL04p017704 Quercus lobata HOM05D008040 ORTHO05D010075 2.5e-19 100.9 357 22.7
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 3.2e-19 100.5 175 36.0
Rhsim11G0097300 Rhododendron simsii HOM05D061936 ORTHO05D010075 7.2e-19 99.4 418 25.8
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 7.2e-19 99.4 107 50.5
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 4.7e-18 96.7 380 25.5
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 8.0e-18 95.9 377 24.4
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 5.2e-17 93.2 315 27.6
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 3.3e-16 90.5 171 37.4
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 2.8e-15 87.4 317 26.8
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 4.8e-15 86.7 386 25.4
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 4.8e-15 86.7 386 25.4
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 4.8e-15 86.7 220 30.9
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 4.8e-15 86.7 169 33.1
Actinidia35149 Actinidia chinensis HOM05D002420 ORTHO05D002422 1.1e-14 85.5 398 23.6
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 1.4e-14 85.1 405 25.7
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.8e-14 84.7 381 22.8
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 4.1e-14 83.6 204 28.4
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 4.1e-14 83.6 397 24.2
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 7.0e-14 82.8 243 27.6
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 2.0e-13 81.3 365 25.5
QL04p019991 Quercus lobata HOM05D002420 ORTHO05D002422 3.5e-13 80.5 386 24.4
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 3.5e-13 80.5 395 25.6
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 5.9e-13 79.7 216 29.2
COL.COLO4_14086 Corchorus olitorius HOM05D011629 ORTHO05D013267 7.7e-13 79.3 354 26.3
QL04p020508 Quercus lobata HOM05D002420 ORTHO05D002422 2.9e-12 77.4 386 23.8
QL09p019845 Quercus lobata HOM05D011629 ORTHO05D013267 8.5e-12 75.9 243 27.6
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 1.1e-11 75.5 262 27.1
Aqoxy3G02433 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.5e-11 75.1 168 31.0
Potri.015G028500 Populus trichocarpa HOM05D002420 ORTHO05D002422 3.2e-11 73.9 399 24.6
Aqoxy3G00584 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 9.4e-11 72.4 198 30.8
Aa31LG3G18820 Aethionema arabicum HOM05D000664 ORTHO05D000491 2.1e-10 71.2 380 24.7
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 2.1e-10 71.2 389 24.4
COL.COLO4_32997 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.7e-10 70.9 220 29.5
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 2.7e-10 70.9 272 25.0
Os07g0535600 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.6e-10 70.5 280 28.9
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 3.6e-10 70.5 272 25.0
CAN.G929.25 Capsicum annuum HOM05D002420 ORTHO05D002422 6.1e-10 69.7 383 23.5
Nitab4.5_0000782g0110 Nicotiana tabacum HOM05D002420 ORTHO05D002422 6.1e-10 69.7 388 25.8
CANSAT01G0762 Cannabis sativa HOM05D011629 ORTHO05D013267 1.0e-09 68.9 244 26.2
CANSAT01G1414 Cannabis sativa HOM05D011629 ORTHO05D013267 1.0e-09 68.9 244 26.2
Sabra15G0023700 Salix brachista HOM05D002420 ORTHO05D002422 1.8e-09 68.2 399 24.8
Aqoxy3G02432 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 2.3e-09 67.8 156 32.7
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 3.0e-09 67.4 261 24.9
Lalb_Chr05g0225771 Lupinus albus HOM05D002420 ORTHO05D002422 4.0e-09 67.0 384 23.4
PSO063G7655 Papaver somniferum HOM05D008326 ORTHO05D001155 5.2e-09 66.6 258 27.5
arahy.Tifrunner.gnm1.ann1.XHBX5X Arachis hypogaea HOM05D002420 ORTHO05D002422 6.8e-09 66.2 244 27.9
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 6.8e-09 66.2 376 23.9
AUR62026556 Chenopodium quinoa HOM05D000079 ORTHO05D000211 8.8e-09 65.9 43 69.8
Rhsim11G0068900 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.8e-09 65.9 164 34.1
PGSC0003DMG400010178 Solanum tuberosum HOM05D002420 ORTHO05D002422 8.8e-09 65.9 393 23.9
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 1.2e-08 65.5 375 24.5
Nitab4.5_0003040g0190 Nicotiana tabacum HOM05D000001 ORTHO05D010224 1.2e-08 65.5 390 24.6
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 1.5e-08 65.1 244 27.5
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 1.5e-08 65.1 172 33.1
Nn5g30450 Nelumbo nucifera HOM05D000664 ORTHO05D000491 2.0e-08 64.7 343 22.7
Duzib168G0815 Durio zibethinus HOM05D002420 ORTHO05D002422 2.6e-08 64.3 404 22.8
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 4.4e-08 63.5 375 22.9
QL04p019597 Quercus lobata HOM05D002420 ORTHO05D002422 4.4e-08 63.5 278 25.2
Sed0018683 Sechium edule HOM05D002420 ORTHO05D002422 4.4e-08 63.5 380 24.5
FvH4_3g32490 Fragaria vesca HOM05D000664 ORTHO05D000491 5.7e-08 63.2 246 26.4
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.7e-08 63.2 278 25.2
Peaxi162Scf00725g00022 Petunia axillaris HOM05D000664 ORTHO05D000491 7.5e-08 62.8 330 25.2
FAN11G0439 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.7e-08 62.4 246 26.4
Gorai.007G311900 Gossypium raimondii HOM05D000664 ORTHO05D000491 9.7e-08 62.4 214 28.0
Dinv15685 Davidia involucrata HOM05D000002 ORTHO05D000001 1.3e-07 62.0 98 37.8
Dinv23189 Davidia involucrata HOM05D000571 ORTHO05D000435 1.7e-07 61.6 352 24.1
Peaxi162Scf00725g00025 Petunia axillaris HOM05D000664 ORTHO05D000491 1.7e-07 61.6 329 24.0
COL.COLO4_37363 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.8e-07 60.8 217 25.8
DCAR_015714 Daucus carota HOM05D033045 ORTHO05D045062 2.8e-07 60.8 205 25.9
Medtr4g009850 Medicago truncatula HOM05D011629 ORTHO05D013267 2.8e-07 60.8 127 37.0
QL04p020224 Quercus lobata HOM05D002420 ORTHO05D002422 2.8e-07 60.8 278 25.2
Gohir.A11G278000 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.7e-07 60.5 214 28.5
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 3.7e-07 60.5 391 22.5
vmacro05613 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.7e-07 60.5 366 23.2
COL.COLO4_14085 Corchorus olitorius HOM05D000206 ORTHO05D002863 4.8e-07 60.1 188 28.7
FAN16G1475 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.8e-07 60.1 251 25.9
Medtr3g011540 Medicago truncatula HOM05D011629 ORTHO05D013267 4.8e-07 60.1 245 25.7
Rhsim11G0068800 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.8e-07 60.1 182 30.2
Gohir.D13G165600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 6.3e-07 59.7 362 23.5
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.1e-06 58.9 378 21.7
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.1e-06 58.9 321 24.6
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 1.1e-06 58.9 335 23.9
DCAR_029676 Daucus carota HOM05D000037 ORTHO05D000648 1.4e-06 58.5 254 24.4
Gohir.A13G160400 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.4e-06 58.5 359 22.3
COL.COLO4_31801 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.8e-06 58.2 236 26.7
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.8e-06 58.2 183 29.0
HanXRQChr16g0524991 Helianthus annuus HOM05D000664 ORTHO05D000491 1.8e-06 58.2 210 27.1
Gohir.D12G199200 Gossypium hirsutum HOM05D000664 ORTHO05D000491 2.4e-06 57.8 322 25.5
Thecc.03G152300 Theobroma cacao HOM05D011629 ORTHO05D013267 2.4e-06 57.8 206 27.7
HanXRQChr16g0498261 Helianthus annuus HOM05D000664 ORTHO05D000491 3.1e-06 57.4 199 27.6
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 3.1e-06 57.4 209 27.3
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 4.1e-06 57.0 200 27.0
Glyma.08G259900 Glycine max HOM05D002420 ORTHO05D002422 4.1e-06 57.0 404 23.0
Gorai.013G197000 Gossypium raimondii HOM05D000664 ORTHO05D000491 4.1e-06 57.0 245 24.9
Thecc.03G149500 Theobroma cacao HOM05D000664 ORTHO05D000491 4.1e-06 57.0 276 26.1
DCAR_016169 Daucus carota HOM05D000664 ORTHO05D000491 5.3e-06 56.6 229 27.9
Psat2g144440 Pisum sativum HOM05D011629 ORTHO05D013267 5.3e-06 56.6 133 31.6
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 5.3e-06 56.6 213 26.8
Cc01_g02550 Coffea canephora HOM05D000664 ORTHO05D000491 7.0e-06 56.2 148 31.1
DCAR_028594 Daucus carota HOM05D000664 ORTHO05D000491 7.0e-06 56.2 208 26.9
FAN21G0725 Fragaria x ananassa HOM05D000026 ORTHO05D000491 9.1e-06 55.8 212 27.8


User provided reference genes

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