Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 2.0e-290 1001.9 582 100.0
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 4.3e-240 834.7 635 80.9
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.8e-100 370.9 736 45.7
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.1e-65 255.4 553 38.0
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.1e-65 255.4 553 38.0
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 2.2e-55 221.1 663 33.8
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 1.8e-52 211.5 579 33.2
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.5e-51 208.4 780 31.8
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 5.7e-51 206.5 679 32.3
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 3.7e-50 203.8 700 33.4
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 8.3e-50 202.6 775 30.7
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 8.3e-50 202.6 748 32.0
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 1.2e-48 198.7 637 33.4
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.2e-48 198.7 746 31.6
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.0e-48 198.0 632 32.6
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 7.7e-48 196.1 747 30.7
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 2.9e-47 194.1 656 31.7
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.9e-47 194.1 756 32.0
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 3.3e-46 190.7 599 32.9
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 3.3e-46 190.7 596 32.2
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 5.5e-46 189.9 755 31.9
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.6e-45 188.3 767 31.9
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 5.2e-44 183.3 725 30.2
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 1.2e-43 182.2 589 32.1
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 1.5e-43 181.8 678 31.1
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 2.8e-42 177.6 570 32.6
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 6.3e-42 176.4 740 28.9
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.4e-41 175.3 593 31.2
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 1.8e-41 174.9 485 34.6
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 2.4e-41 174.5 523 34.4
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 4.1e-41 173.7 677 31.6
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 7.0e-41 172.9 613 31.3
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 1.6e-40 171.8 497 33.2
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 5.9e-40 169.9 656 30.8
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 7.8e-40 169.5 694 30.5
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.0e-39 169.1 619 30.9
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.5e-38 165.2 602 30.9
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 1.9e-38 164.9 616 33.8
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.9e-38 164.9 559 32.7
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.3e-38 164.1 619 30.2
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 4.3e-38 163.7 528 32.4
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 7.3e-38 162.9 462 33.5
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 7.3e-38 162.9 295 42.7
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 3.6e-37 160.6 608 32.1
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 6.1e-37 159.8 566 31.8
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.0e-35 154.8 647 29.1
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 3.4e-35 154.1 762 29.4
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 3.4e-35 154.1 512 33.6
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 4.4e-35 153.7 606 30.0
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 4.4e-35 153.7 520 31.3
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 2.2e-34 151.4 680 31.2
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.9e-34 151.0 619 30.9
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 2.9e-34 151.0 428 33.2
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 1.9e-33 148.3 591 28.9
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 2.4e-33 147.9 694 33.7
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 7.0e-33 146.4 742 29.1
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 9.2e-33 146.0 597 30.2
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.2e-32 145.6 685 28.9
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.0e-31 141.0 484 31.2
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 5.0e-31 140.2 760 28.9
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 6.6e-31 139.8 585 29.1
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 6.6e-31 139.8 594 30.8
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 2.5e-30 137.9 655 28.1
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 3.3e-30 137.5 635 28.0
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 3.3e-30 137.5 493 32.0
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 7.3e-30 136.3 465 32.5
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.1e-28 132.5 331 36.3
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.4e-28 132.1 594 29.8
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.8e-28 131.7 737 26.7
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 4.0e-28 130.6 744 28.2
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 5.2e-28 130.2 469 29.6
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 6.8e-28 129.8 333 35.7
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 8.9e-28 129.4 621 29.3
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 7.5e-27 126.3 710 29.9
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 2.2e-26 124.8 643 27.2
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 3.7e-26 124.0 775 28.8
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 6.4e-26 123.2 694 28.0
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.4e-25 122.1 634 27.3
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.4e-25 121.3 650 27.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.6e-24 118.6 612 27.6
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 2.1e-24 118.2 525 29.3
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 8.6e-23 112.8 562 29.7
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 9.5e-22 109.4 589 31.9
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 4.7e-21 107.1 493 28.4
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.3e-20 104.8 674 27.9
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 6.8e-20 103.2 605 27.3
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 2.2e-18 98.2 344 33.4
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.2e-16 92.4 453 28.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 2.1e-16 91.7 252 34.1
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 6.0e-16 90.1 659 25.3
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 1.7e-15 88.6 481 27.2
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 7.3e-14 83.2 533 28.3
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 2.8e-13 81.3 405 29.6
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 1.2e-11 75.9 641 25.7
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 2.0e-11 75.1 577 25.6
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.6e-11 74.7 647 25.7
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.6e-11 74.7 647 25.7
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 3.4e-11 74.3 649 25.1
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 9.9e-11 72.8 641 25.6
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 9.9e-11 72.8 655 24.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.3e-10 72.4 241 32.0
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 4.9e-10 70.5 650 24.9
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 8.4e-10 69.7 555 26.8
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 1.4e-09 68.9 589 26.3
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 9.2e-09 66.2 580 25.2
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 6.0e-08 63.5 448 25.2
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 1.7e-07 62.0 173 34.1
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 2.3e-07 61.6 498 26.3
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 2.3e-07 61.6 431 26.5
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 1.9e-06 58.5 129 41.9


User provided reference genes

Program Settings