Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 5.8e-99 364.4 204 100.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 8.4e-82 307.4 182 98.9
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.6e-77 293.1 182 89.6
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.3e-69 266.9 181 74.6
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 8.1e-69 264.2 182 72.5
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.1e-68 263.8 155 81.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.2e-67 260.4 152 82.2
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.5e-67 260.0 155 81.3
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.6e-67 259.2 152 81.6
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 4.4e-67 258.5 155 81.9
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.3e-66 256.9 154 81.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-66 256.9 155 80.0
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.7e-66 256.5 155 80.0
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.7e-66 256.5 149 83.2
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.2e-66 256.1 156 79.5
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 2.2e-66 256.1 154 79.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 2.2e-66 256.1 154 79.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.9e-66 255.8 149 82.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 3.8e-66 255.4 178 70.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.9e-66 255.0 155 78.7
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.9e-66 255.0 155 78.7
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 6.4e-66 254.6 155 78.7
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.9e-65 253.1 147 82.3
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.4e-65 252.7 155 79.4
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.4e-65 252.7 155 77.4
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.4e-65 252.7 155 78.7
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.2e-65 252.3 155 77.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 4.2e-65 251.9 154 78.6
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.2e-65 251.9 155 77.4
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 4.2e-65 251.9 154 77.9
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.4e-65 251.5 155 76.8
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.4e-65 251.5 154 79.9
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 7.1e-65 251.1 152 78.3
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 9.3e-65 250.8 155 78.1
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 9.3e-65 250.8 155 78.7
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.2e-64 250.4 155 76.1
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.2e-64 250.4 155 78.1
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.6e-64 250.0 155 76.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.6e-64 250.0 152 77.0
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 1.6e-64 250.0 152 77.0
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.6e-64 250.0 154 78.6
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 2.7e-64 249.2 155 77.4
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.7e-64 249.2 181 69.1
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 2.7e-64 249.2 151 78.1
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.7e-64 249.2 151 77.5
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.7e-64 249.2 147 81.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.5e-64 248.8 155 76.1
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 3.5e-64 248.8 155 76.8
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 3.5e-64 248.8 147 81.0
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 3.5e-64 248.8 150 79.3
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 3.5e-64 248.8 149 80.5
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.5e-64 248.8 155 76.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 3.5e-64 248.8 154 76.6
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.6e-64 248.4 152 77.0
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 4.6e-64 248.4 149 79.2
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 4.6e-64 248.4 151 78.8
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.6e-64 248.4 155 76.1
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 6.0e-64 248.1 150 77.3
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.9e-64 247.7 135 91.1
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 7.9e-64 247.7 155 75.5
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 7.9e-64 247.7 155 75.5
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 7.9e-64 247.7 155 75.5
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 7.9e-64 247.7 155 75.5
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.0e-63 247.3 155 76.8
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.3e-63 246.9 147 80.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.3e-63 246.9 146 80.1
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.7e-63 246.5 151 78.1
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-63 246.5 154 76.0
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.7e-63 246.5 155 76.1
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.7e-63 246.5 151 79.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.7e-63 246.5 151 79.5
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.7e-63 246.5 151 79.5
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.3e-63 246.1 151 78.8
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 2.3e-63 246.1 146 78.8
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.3e-63 246.1 151 77.5
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-63 245.7 148 77.7
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 3.0e-63 245.7 149 77.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.0e-63 245.7 149 79.9
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 3.9e-63 245.4 154 77.3
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 5.1e-63 245.0 146 80.8
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 5.1e-63 245.0 154 77.3
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.6e-63 244.6 152 77.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 6.6e-63 244.6 152 77.0
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 6.6e-63 244.6 152 77.6
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 8.7e-63 244.2 149 77.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 8.7e-63 244.2 149 77.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.7e-63 244.2 155 76.1
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 8.7e-63 244.2 153 79.1
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 8.7e-63 244.2 153 79.1
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.1e-62 243.8 148 78.4
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.5e-62 243.4 149 78.5
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.5e-62 243.4 146 79.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.5e-62 243.4 152 76.3
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.5e-62 242.7 147 78.2
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.5e-62 242.7 149 79.2
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.3e-62 242.3 152 74.3
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 3.3e-62 242.3 153 76.5
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 3.3e-62 242.3 155 76.1
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 3.3e-62 242.3 151 76.8
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.3e-62 241.9 147 79.6
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 5.6e-62 241.5 147 79.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 9.6e-62 240.7 154 73.4
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-61 239.6 154 74.7
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.1e-61 239.6 154 72.7
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.8e-61 239.2 151 74.2
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 3.6e-61 238.8 146 77.4
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.6e-61 238.8 147 76.9
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 3.6e-61 238.8 157 75.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 4.8e-61 238.4 151 72.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 6.2e-61 238.0 147 74.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.1e-60 237.3 155 74.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 3.1e-60 235.7 147 74.8
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.6e-59 232.6 147 72.8
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.6e-59 232.6 147 76.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 3.8e-58 228.8 153 71.9
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 9.3e-57 224.2 137 78.8
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 9.3e-57 224.2 153 70.6
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.7e-56 222.6 154 70.1
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.6e-53 213.4 149 68.5
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.6e-53 213.4 154 65.6
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.9e-50 202.6 160 61.9
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.9e-50 202.6 159 62.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 2.3e-47 193.0 146 65.1
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-46 190.3 149 65.1
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.8e-44 183.3 155 61.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 3.6e-40 169.1 108 75.0
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 4.6e-40 168.7 108 75.0
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-39 167.5 108 73.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 5.1e-39 165.2 108 73.1
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-39 165.2 108 73.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.1e-39 165.2 108 72.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.7e-39 164.9 108 73.1
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.7e-39 164.9 108 73.1
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-38 161.8 102 74.5
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-38 161.8 108 71.3
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-38 161.8 102 74.5
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.8e-37 159.5 168 46.4
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.7e-37 159.1 155 48.4
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.0e-35 153.3 92 79.3
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.2e-33 145.6 87 80.5
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 6.1e-32 141.7 91 74.7
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 3.7e-29 132.5 195 40.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.1e-28 131.0 164 43.3
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-27 127.5 108 60.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.6e-27 126.3 80 77.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.6e-27 126.3 80 77.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-27 126.3 80 77.5
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.5e-27 125.6 118 57.6
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 9.7e-22 107.8 86 64.0
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-20 104.0 75 64.0
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.4e-20 104.0 60 81.7
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 5.3e-20 102.1 63 79.4
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.2e-19 100.9 58 81.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 3.5e-19 99.4 63 68.3
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.0e-18 97.8 63 69.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 3.8e-18 95.9 61 75.4
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.6e-16 90.5 172 31.4
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.5e-14 84.0 56 67.9
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 4.8e-13 79.0 44 86.4
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 7.7e-11 71.6 68 55.9


User provided reference genes

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