Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-68 263.5 176 100.0
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-67 260.4 176 97.7
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.9e-67 258.8 176 97.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 9.2e-53 210.7 177 85.3
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.5e-50 203.4 178 82.6
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 5.4e-45 184.9 177 76.8
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.5e-42 176.8 177 76.8
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.6e-41 173.3 177 63.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 8.1e-41 171.0 173 64.2
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 78.8
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.1e-40 169.1 172 76.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.0e-40 168.7 165 78.8
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.0e-40 168.7 165 78.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 5.2e-40 168.3 173 64.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.8e-40 167.9 170 77.1
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 8.9e-40 167.5 178 54.5
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 8.9e-40 167.5 168 64.3
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.2e-39 167.2 170 61.2
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-39 167.2 172 61.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-39 167.2 170 61.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-39 167.2 170 61.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.4e-39 165.2 172 73.8
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 7.5e-39 164.5 173 68.8
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.9e-39 164.1 172 61.0
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.7e-38 163.3 168 64.9
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.2e-38 162.9 166 65.7
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 2.9e-38 162.5 165 64.8
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.7e-38 162.2 174 63.8
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.7e-38 162.2 169 68.6
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 6.4e-38 161.4 170 61.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 6.4e-38 161.4 164 63.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 8.3e-38 161.0 170 62.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.1e-37 160.6 160 63.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.4e-37 160.2 164 63.4
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.9e-37 159.8 176 72.2
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.4e-37 159.5 167 76.0
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.4e-37 159.5 170 74.7
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 3.2e-37 159.1 174 50.6
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 3.2e-37 159.1 152 78.9
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.2e-37 159.1 176 73.9
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 4.1e-37 158.7 166 75.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 4.1e-37 158.7 166 75.3
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 5.4e-37 158.3 173 63.0
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 5.4e-37 158.3 154 76.6
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 9.2e-37 157.5 177 74.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-36 157.1 170 61.2
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.2e-36 157.1 171 75.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.2e-36 157.1 172 74.4
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.2e-36 157.1 168 61.3
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.2e-36 157.1 159 76.1
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.1e-36 156.4 164 64.0
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.1e-36 156.4 170 65.3
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.0e-36 154.8 170 62.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 6.0e-36 154.8 170 72.4
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 172 62.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.3e-35 153.7 170 70.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 74.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.3e-35 153.7 171 74.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.3e-35 152.9 172 61.0
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.3e-35 152.9 170 73.5
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.3e-35 152.9 172 71.5
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.3e-35 152.9 176 60.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.3e-35 152.9 151 76.2
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.3e-35 152.9 159 76.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.0e-35 152.5 172 60.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 3.0e-35 152.5 159 64.2
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.0e-35 152.5 157 54.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.9e-35 152.1 164 73.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.9e-35 152.1 166 72.9
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.1e-35 151.8 163 63.8
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.1e-35 151.8 172 59.9
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.1e-35 151.8 169 59.2
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.1e-35 151.8 166 62.0
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 6.6e-35 151.4 173 73.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 168 63.1
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 60.5
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 60.5
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.3e-34 149.1 158 64.6
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.3e-34 149.1 172 60.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 4.3e-34 148.7 173 59.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 179 71.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 179 71.5
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 5.6e-34 148.3 167 61.1
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 7.3e-34 147.9 165 75.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 7.3e-34 147.9 166 72.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.2e-33 147.1 159 65.4
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.1e-33 146.4 165 73.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.6e-33 145.6 163 62.0
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.7e-33 145.2 164 59.8
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 6.2e-33 144.8 164 68.9
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 8.1e-33 144.4 156 73.1
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.4e-32 143.7 158 75.3
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.4e-32 143.7 170 69.4
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 4.0e-32 142.1 165 58.2
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 6.8e-32 141.4 161 75.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.0e-31 139.8 162 62.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.6e-31 139.4 141 72.3
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.4e-31 138.7 151 70.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.6e-31 137.9 172 71.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.3e-30 137.1 163 71.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-30 136.0 151 74.8
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-30 136.0 151 74.8
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 3.8e-30 135.6 161 70.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 166 61.4
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 167 70.1
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.4e-29 133.7 161 57.1
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.4e-29 131.7 164 44.5
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 7.1e-29 131.3 160 70.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 7.1e-29 131.3 143 63.6
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.2e-28 130.6 175 54.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.1e-28 129.8 165 55.8
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 2.1e-28 129.8 165 69.7
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.0e-28 128.3 168 54.8
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 7.8e-28 127.9 229 36.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-27 127.5 167 53.9
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.0e-27 127.5 167 53.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.0e-27 127.5 167 53.9
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.0e-27 127.5 165 68.5
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.7e-27 126.7 164 45.1
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.0e-27 125.9 164 44.5
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 5.1e-27 125.2 167 67.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 6.6e-27 124.8 167 67.1
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 6.6e-27 124.8 167 67.1
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.6e-27 124.8 168 45.2
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 8.7e-27 124.4 165 55.2
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 8.7e-27 124.4 167 66.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.5e-26 123.6 151 57.0
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.5e-26 123.6 168 44.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.9e-26 123.2 167 67.7
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 5.6e-26 121.7 168 66.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.3e-26 121.3 165 43.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 9.6e-26 120.9 166 63.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.2e-25 120.6 159 52.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.1e-25 119.8 151 55.0
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.6e-25 119.0 142 73.2
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.4e-24 116.3 146 58.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.6e-23 112.8 125 62.4
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.7e-20 102.8 123 62.6
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.7e-19 100.1 117 62.4
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.3e-18 95.9 121 61.2
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.1e-17 91.3 84 56.0
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.4e-16 90.5 129 55.8
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.1e-16 89.4 97 72.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 5.3e-16 88.6 151 49.7
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 5.3e-16 88.6 97 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.0e-15 86.7 107 40.2
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 9.3e-13 77.8 80 77.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 3.0e-11 72.8 83 44.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.5e-10 69.7 42 71.4
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 5.6e-10 68.6 48 66.7


User provided reference genes

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