Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 2.0e-125 453.8 568 100.0
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.3e-111 407.9 568 96.3
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 2.0e-80 304.3 202 72.3
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 5.2e-57 226.5 206 54.4
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 4.9e-55 219.9 194 56.2
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 1.2e-53 215.3 196 56.1
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 4.6e-53 213.4 196 54.1
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 7.3e-51 206.1 197 51.3
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 3.6e-50 203.8 200 53.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 8.1e-50 202.6 207 47.3
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 8.1e-50 202.6 200 51.5
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 1.4e-49 201.8 197 47.7
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 1.8e-49 201.4 199 51.3
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 2.3e-49 201.1 200 53.0
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.5e-48 198.4 207 47.8
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 3.4e-48 197.2 192 47.9
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 4.4e-48 196.8 207 45.9
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 4.4e-48 196.8 202 51.5
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 4.4e-48 196.8 190 53.2
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 5.8e-48 196.4 207 47.8
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 5.8e-48 196.4 199 50.3
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.6e-48 196.1 207 46.4
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.9e-48 195.7 203 47.3
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 1.7e-47 194.9 199 47.7
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 1.7e-47 194.9 210 49.5
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 2.2e-47 194.5 207 45.9
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.1e-46 192.2 209 48.3
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 1.1e-46 192.2 204 48.5
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 1.4e-46 191.8 197 48.7
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 1.4e-46 191.8 191 51.8
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 1.9e-46 191.4 207 45.4
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 2.4e-46 191.0 200 49.0
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 5.4e-46 189.9 207 45.4
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 1.6e-45 188.3 190 48.9
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 2.7e-45 187.6 207 44.9
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 3.5e-45 187.2 203 47.3
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 6.0e-45 186.4 190 48.4
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 1.7e-44 184.9 191 48.2
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 6.6e-44 183.0 208 46.2
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 4.3e-43 180.3 209 45.9
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 5.6e-43 179.9 202 46.5
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 5.6e-43 179.9 202 46.5
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 9.6e-43 179.1 214 43.9
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 6.2e-42 176.4 194 47.9
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 1.4e-41 175.3 194 46.4
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 1.8e-41 174.9 206 46.1
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 1.8e-41 174.9 188 45.7
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.4e-41 174.5 194 46.4
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 8.9e-41 172.6 207 45.9
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 3.4e-40 170.6 211 44.1
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 1.3e-39 168.7 204 44.6
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 1.7e-39 168.3 191 47.6
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 4.9e-39 166.8 200 45.5
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 6.4e-39 166.4 200 45.5
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 6.4e-39 166.4 194 45.4
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 3.2e-38 164.1 201 44.8
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 5.4e-38 163.3 212 43.4
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.6e-37 161.8 194 40.7
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 2.7e-37 161.0 197 44.2
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.7e-36 158.3 200 44.5
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 1.7e-36 158.3 158 51.9
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 3.9e-36 157.1 194 43.8
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 3.9e-36 157.1 191 44.5
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 8.7e-36 156.0 195 42.1
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 8.7e-36 156.0 200 42.0
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 1.1e-35 155.6 196 42.9
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 1.5e-35 155.2 197 42.1
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.5e-35 154.5 201 43.3
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 7.3e-35 152.9 196 43.4
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 9.6e-35 152.5 163 44.8
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 1.3e-34 152.1 196 43.4
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.6e-34 151.8 203 41.9
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 4.8e-34 150.2 194 42.8
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 9.0e-33 146.0 195 41.0
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 3.4e-32 144.1 194 39.7
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 7.6e-32 142.9 194 39.7
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 7.6e-32 142.9 158 43.7
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 9.9e-32 142.5 157 43.9
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 4.9e-31 140.2 196 39.8
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 6.4e-31 139.8 194 39.7
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 1.1e-30 139.0 174 43.1
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 7.9e-29 132.9 195 39.0
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 2.3e-28 131.3 158 44.9
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 1.8e-25 121.7 153 41.8
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 5.3e-25 120.2 146 41.8
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 9.0e-25 119.4 189 37.0
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.3e-22 109.4 128 42.2
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.2e-21 109.0 125 44.0
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 1.9e-19 101.7 123 43.9
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 2.1e-18 98.2 138 41.3
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 7.6e-16 89.7 133 40.6
HPP92_020723 Vanilla planifolia HOM05D007340 ORTHO05D008979 1.4e-14 85.5 230 30.9
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 3.2e-14 84.3 202 31.2
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 5.5e-14 83.6 196 28.6
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 1.2e-13 82.4 96 44.8
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 1.2e-13 82.4 96 44.8
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 1.6e-13 82.0 99 38.4
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 2.1e-13 81.6 71 52.1
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 4.6e-13 80.5 208 27.9
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 6.0e-13 80.1 119 40.3
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.9e-12 77.4 212 27.8
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.1e-11 75.9 207 28.0
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.1e-11 75.9 207 28.0
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 1.9e-11 75.1 207 30.4
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 7.4e-11 73.2 218 28.9
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 4.8e-10 70.5 200 29.0
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 4.8e-10 70.5 211 27.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 4.8e-10 70.5 215 25.6
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 8.2e-10 69.7 207 26.6
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 1.1e-09 69.3 214 23.4
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.4e-09 68.9 215 27.0
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 3.1e-09 67.8 224 25.4
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 4.1e-09 67.4 209 26.8
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 4.1e-09 67.4 211 26.5
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 5.3e-09 67.0 219 23.7
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 5.3e-09 67.0 201 28.9
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 6.9e-09 66.6 182 29.1
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 9.0e-09 66.2 209 27.3
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 9.0e-09 66.2 196 27.0
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 9.0e-09 66.2 199 26.6
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 9.0e-09 66.2 209 27.3
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 1.2e-08 65.9 201 26.4
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 1.2e-08 65.9 204 21.6
SEGI_22909 Sequoiadendron giganteum HOM05D007340 ORTHO05D008979 1.2e-08 65.9 90 38.9
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 1.5e-08 65.5 199 27.6
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 1.5e-08 65.5 213 26.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 1.5e-08 65.5 202 26.2
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 1.5e-08 65.5 217 23.5
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 2.0e-08 65.1 199 25.6
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 2.0e-08 65.1 201 27.9
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 2.6e-08 64.7 209 26.8
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 2.6e-08 64.7 200 25.5
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 3.4e-08 64.3 209 27.3
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 4.5e-08 63.9 215 27.0
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 4.5e-08 63.9 198 26.3
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 5.8e-08 63.5 197 26.9
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 7.6e-08 63.2 214 25.2
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 7.6e-08 63.2 193 26.4
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.3e-07 62.4 225 24.9
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 2.2e-07 61.6 201 24.4
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 2.2e-07 61.6 194 22.7
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 2.2e-07 61.6 201 26.4
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 2.2e-07 61.6 206 24.8
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 2.2e-07 61.6 209 25.4
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 2.9e-07 61.2 203 24.1
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 3.8e-07 60.8 214 26.6
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 3.8e-07 60.8 160 26.9
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 5.0e-07 60.5 121 28.1
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 5.0e-07 60.5 200 22.5
TPR.G39133 Trifolium pratense HOM05D000104 ORTHO05D009920 5.0e-07 60.5 199 26.6
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 6.5e-07 60.1 196 24.0
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 6.5e-07 60.1 214 24.3
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 6.5e-07 60.1 209 25.8
C04p66310 Brassica napus HOM05D000104 ORTHO05D009920 8.4e-07 59.7 172 26.7
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 8.4e-07 59.7 214 21.5
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 1.1e-06 59.3 198 25.8
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.1e-06 59.3 173 23.7
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.4e-06 58.9 154 32.5
Lsat_1_v5_gn_4_28380 Lactuca sativa HOM05D007340 ORTHO05D008979 1.4e-06 58.9 79 31.6
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 1.9e-06 58.5 113 31.0
CARHR000280 Cardamine hirsuta HOM05D000104 ORTHO05D009920 1.9e-06 58.5 168 28.0
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 1.9e-06 58.5 202 23.8
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.9e-06 58.5 82 34.1
BolC4t28135H Brassica oleracea HOM05D000104 ORTHO05D009920 3.2e-06 57.8 172 25.6
Gohir.A05G005000 Gossypium hirsutum HOM05D002737 ORTHO05D009499 3.2e-06 57.8 178 26.4
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 3.2e-06 57.8 215 22.8
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 4.2e-06 57.4 127 27.6
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 4.2e-06 57.4 197 25.4
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 4.2e-06 57.4 226 22.1
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 4.2e-06 57.4 217 23.0
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.5e-06 57.0 198 25.3
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 5.5e-06 57.0 217 23.0
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 5.5e-06 57.0 202 24.3
Gorai.009G005800 Gossypium raimondii HOM05D002737 ORTHO05D009499 7.1e-06 56.6 178 25.8
Prupe.1G570100 Prunus persica HOM05D007340 ORTHO05D008979 7.1e-06 56.6 79 44.3
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 9.3e-06 56.2 166 23.5


User provided reference genes

Program Settings