Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 6.4e-90 334.0 157 100.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.4e-89 330.9 157 98.7
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 5.4e-81 304.3 157 89.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.3e-77 293.1 157 86.0
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.1e-73 280.0 163 81.0
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.4e-73 278.9 163 79.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.5e-73 277.7 163 80.4
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 9.3e-73 276.9 163 78.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.2e-72 276.6 162 79.6
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 6.0e-72 274.2 163 77.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.9e-72 273.9 163 79.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.0e-71 273.5 163 79.1
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.0e-71 273.5 163 78.5
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.3e-71 273.1 163 79.1
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.8e-71 272.7 157 82.2
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 79.8
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.8e-71 272.7 163 77.3
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 3.0e-71 271.9 163 77.3
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 5.1e-71 271.2 163 76.7
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.9e-70 269.2 163 76.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 4.3e-70 268.1 159 78.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 7.4e-70 267.3 158 77.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 76.1
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-69 266.5 141 84.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.1e-69 265.8 163 76.1
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.8e-69 265.4 140 87.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 4.8e-69 264.6 162 76.5
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 8.2e-69 263.8 163 74.8
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 8.2e-69 263.8 163 74.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 8.2e-69 263.8 162 76.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.1e-68 263.5 163 76.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.8e-68 262.7 163 76.1
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.8e-68 262.7 163 76.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.1e-68 261.9 141 84.4
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.0e-68 261.5 163 75.5
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 5.3e-68 261.2 160 76.9
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 5.3e-68 261.2 163 75.5
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 9.0e-68 260.4 160 76.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 9.0e-68 260.4 160 76.2
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 9.0e-68 260.4 163 74.2
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 75.5
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.5e-67 259.6 160 76.2
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.0e-67 259.2 140 84.3
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.0e-67 259.2 157 76.4
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 2.6e-67 258.8 163 73.6
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.6e-67 258.8 163 75.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.5e-67 258.1 140 83.6
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.5e-67 258.1 163 73.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 5.8e-67 257.7 163 74.8
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 7.6e-67 257.3 141 83.0
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.2e-66 255.8 163 73.6
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.2e-66 255.8 159 75.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.9e-66 255.4 141 83.0
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.9e-66 255.4 163 75.5
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.9e-66 255.4 141 83.0
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 3.8e-66 255.0 163 74.8
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 3.8e-66 255.0 163 73.0
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 4.9e-66 254.6 163 73.6
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 6.5e-66 254.2 163 72.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 6.5e-66 254.2 160 75.6
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 8.4e-66 253.8 141 82.3
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 8.4e-66 253.8 140 82.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.1e-65 253.4 163 72.4
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.4e-65 253.1 160 74.4
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.4e-65 253.1 160 75.0
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.4e-65 253.1 139 83.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.4e-65 253.1 139 83.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.9e-65 252.7 159 73.0
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 4.2e-65 251.5 163 71.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 4.2e-65 251.5 163 71.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.2e-65 251.5 141 79.4
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 4.2e-65 251.5 160 73.1
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 5.5e-65 251.1 163 72.4
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.5e-65 251.1 163 72.4
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 7.1e-65 250.8 163 71.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.6e-64 249.6 141 80.1
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.7e-64 248.8 141 78.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 3.5e-64 248.4 163 71.2
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 3.5e-64 248.4 163 70.6
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.0e-64 247.7 163 68.1
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 7.9e-64 247.3 160 72.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.0e-63 246.9 160 73.1
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.3e-63 246.5 163 70.6
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.3e-63 245.7 141 80.1
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 5.1e-63 244.6 160 72.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.7e-63 243.8 141 75.9
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.1e-62 243.4 141 79.4
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-62 243.0 141 77.3
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-62 243.0 141 77.3
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-62 243.0 141 75.2
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 7.4e-62 240.7 160 71.9
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-61 240.0 141 75.9
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.6e-61 239.6 141 75.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.8e-61 238.8 141 76.6
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.8e-61 238.8 141 76.6
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-61 238.4 141 75.9
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.8e-61 238.0 136 77.2
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.2e-61 237.3 124 88.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 8.2e-61 237.3 163 69.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-60 236.9 136 75.7
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 6.9e-60 234.2 157 70.7
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.2e-58 229.2 141 73.0
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 5.0e-58 228.0 141 74.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.5e-57 225.7 163 64.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 3.2e-57 225.3 142 71.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 4.2e-57 224.9 160 64.4
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 5.5e-57 224.6 164 65.9
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 7.2e-57 224.2 163 65.0
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.6e-56 223.0 139 71.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.6e-56 223.0 136 72.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.1e-56 222.6 159 64.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 2.7e-56 222.2 136 72.8
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.0e-55 218.8 160 67.5
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.9e-54 216.1 157 63.7
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.0e-51 206.1 109 88.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.0e-47 193.7 163 60.1
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.4e-46 188.3 163 55.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 4.8e-45 184.9 163 55.2
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 6.9e-44 181.0 141 63.8
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.5e-43 178.3 123 68.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.0e-42 174.9 131 62.6
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 6.1e-40 167.9 123 63.4
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.0e-39 167.2 163 56.4
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 8.8e-39 164.1 103 71.8
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.8e-37 159.1 123 61.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.8e-37 158.3 142 55.6
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 9.4e-33 144.1 164 47.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.6e-32 143.3 164 46.3
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-32 142.1 176 49.4
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 6.1e-32 141.4 176 49.4
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 6.1e-32 141.4 90 72.2
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.0e-30 136.3 163 46.6
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.4e-30 135.2 164 47.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 8.2e-29 131.0 165 43.0
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.5e-27 125.6 126 54.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.0e-23 114.0 67 82.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.2e-21 106.3 139 42.4
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.8e-15 86.7 59 67.8
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 6.3e-13 78.2 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 4.1e-12 75.5 117 38.5
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-11 73.6 62 58.1
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 6.6e-10 68.2 48 62.5
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.6e-10 68.2 58 56.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.4e-07 60.5 91 38.5
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 4.0e-07 58.9 46 56.5


User provided reference genes

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