Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-133 478.8 236 100.0
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.2e-126 455.7 236 94.9
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.9e-126 455.3 234 95.7
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.8e-97 359.0 233 74.7
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.2e-93 345.5 232 71.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.0e-86 323.9 235 67.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 4.1e-72 275.4 238 58.0
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 3.2e-69 265.8 239 56.9
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 7.2e-69 264.6 212 59.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 6.1e-68 261.5 233 56.2
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 1.4e-67 260.4 239 54.8
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.1e-67 258.5 239 54.4
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.1e-66 257.3 239 54.0
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.4e-66 255.4 228 56.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 4.4e-66 255.4 232 56.0
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.7e-65 253.4 241 54.4
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.7e-65 252.3 227 54.6
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 6.3e-65 251.5 235 53.6
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.1e-64 250.8 239 54.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-64 250.8 231 55.0
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.8e-64 250.0 229 56.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 2.4e-64 249.6 232 55.6
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 3.1e-64 249.2 232 56.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 7.0e-64 248.1 230 54.8
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.0e-64 248.1 235 54.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.2e-63 247.3 239 52.7
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.6e-63 246.1 232 55.2
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 4.5e-63 245.4 241 51.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 4.5e-63 245.4 229 55.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.9e-63 245.0 239 53.1
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-62 244.2 230 55.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 3.8e-62 242.3 226 53.1
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.0e-62 241.9 231 53.2
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 8.5e-62 241.1 231 53.7
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.1e-61 240.7 243 51.9
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-61 240.4 233 54.9
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.9e-61 240.0 233 51.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.2e-61 239.2 234 54.7
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 4.2e-61 238.8 232 55.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.5e-61 238.4 233 51.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.5e-61 238.4 233 51.9
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.2e-61 238.0 232 50.9
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 9.4e-61 237.7 226 51.8
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.2e-60 237.3 233 53.6
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.6e-60 236.9 240 52.5
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.6e-60 236.9 230 51.3
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.6e-60 236.9 237 54.9
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 4.7e-60 235.3 235 51.1
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 8.0e-60 234.6 229 52.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 8.0e-60 234.6 234 52.1
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 8.0e-60 234.6 232 54.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.0e-59 234.2 237 52.7
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.0e-59 234.2 240 49.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.4e-59 233.8 226 51.3
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.8e-59 233.4 231 52.8
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.8e-59 233.4 226 50.4
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.3e-59 233.0 230 52.6
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 3.0e-59 232.6 228 52.6
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.0e-59 232.6 238 52.1
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.1e-58 230.7 225 52.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.1e-58 230.7 226 51.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.0e-58 229.9 228 49.1
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 2.0e-58 229.9 227 51.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.6e-58 229.6 242 48.8
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.6e-58 229.6 223 50.2
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 3.3e-58 229.2 228 50.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.4e-58 228.8 230 50.4
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.5e-58 228.0 229 49.8
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.3e-57 227.3 234 52.6
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.7e-57 226.9 239 51.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.7e-57 226.9 232 47.8
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.2e-57 226.5 226 50.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.8e-57 226.1 229 51.1
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 6.3e-57 224.9 241 49.4
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.4e-56 223.8 239 51.5
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.4e-56 223.0 219 51.6
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.1e-56 222.6 230 51.7
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 3.1e-56 222.6 233 49.8
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 4.1e-56 222.2 190 59.5
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 4.1e-56 222.2 233 51.9
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 4.1e-56 222.2 235 51.9
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 4.1e-56 222.2 240 50.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.0e-56 221.5 229 50.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 2.0e-55 219.9 234 51.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 2.6e-55 219.5 237 49.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.5e-55 218.8 211 52.6
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 5.9e-55 218.4 238 47.1
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-54 217.6 240 48.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 8.5e-54 214.5 237 48.9
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 8.5e-54 214.5 238 48.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.9e-53 213.4 211 50.2
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 3.2e-53 212.6 239 47.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 3.2e-53 212.6 239 47.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 9.4e-53 211.1 234 48.3
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.2e-52 210.7 242 46.7
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.2e-52 210.7 233 50.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.6e-52 210.3 242 45.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.1e-52 209.9 204 52.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 8.0e-52 208.0 233 46.4
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.4e-51 207.2 237 47.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.8e-51 206.8 224 49.1
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.3e-51 206.5 211 51.2
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.3e-51 206.5 211 51.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.0e-51 205.7 236 47.9
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 8.8e-51 204.5 241 44.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.2e-50 204.1 229 50.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.5e-50 203.8 234 45.7
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 4.4e-50 202.2 181 58.0
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 7.5e-50 201.4 232 45.3
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.5e-50 201.4 218 47.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.7e-49 200.3 199 53.3
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.7e-49 199.1 222 47.7
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 6.3e-49 198.4 236 45.3
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 8.3e-49 198.0 233 45.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-48 197.2 233 45.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.8e-48 196.8 233 45.1
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.1e-48 195.7 233 44.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 9.1e-48 194.5 233 45.1
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 9.1e-48 194.5 235 42.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.5e-47 192.6 202 50.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.3e-46 190.7 227 44.1
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.5e-46 188.3 207 48.8
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.5e-45 187.2 227 44.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.5e-45 187.2 232 44.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.5e-45 186.4 186 53.2
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.5e-45 186.4 186 53.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.8e-43 180.3 164 58.5
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.8e-43 180.3 231 42.0
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.5e-42 177.2 210 46.7
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.7e-41 173.7 190 47.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 3.7e-41 172.6 227 45.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.3e-38 164.1 236 39.8
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 3.8e-38 162.5 250 37.6
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 5.0e-38 162.2 203 42.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.5e-37 160.6 247 38.1
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-34 151.0 170 50.6
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.3e-30 137.5 160 44.4
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.5e-29 133.3 145 50.3
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-26 124.4 96 60.4
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 7.0e-24 115.2 136 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 9.2e-24 114.8 238 34.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.7e-22 110.5 82 65.9
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.0e-22 109.8 102 46.1
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 8.6e-22 108.2 84 60.7
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.3e-21 105.9 88 59.1
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 3.4e-18 96.3 146 39.7
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 4.4e-18 95.9 250 28.4
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.7e-17 94.0 120 42.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 9.2e-16 88.2 78 53.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 7.8e-15 85.1 99 45.5
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.9e-09 66.6 46 65.2


User provided reference genes

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