Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.0e-117 426.8 215 100.0
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-72 275.0 183 82.0
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.2e-69 266.2 205 73.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.2e-57 227.3 202 64.4
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.5e-52 210.3 205 61.5
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.6e-41 172.9 199 52.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-39 167.2 113 77.9
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.2e-35 154.1 198 47.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.6e-35 152.5 179 50.3
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.8e-34 150.2 200 45.5
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.8e-34 150.2 200 43.5
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.8e-34 150.2 216 42.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.3e-34 149.8 201 45.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.1e-34 149.4 195 46.7
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 5.2e-34 148.7 202 44.6
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 8.9e-34 147.9 201 46.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.5e-33 147.1 179 46.9
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.5e-33 147.1 200 42.5
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-33 146.4 179 46.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.8e-33 145.2 179 46.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 5.8e-33 145.2 201 45.3
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 7.6e-33 144.8 198 44.9
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.6e-33 144.8 179 46.4
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 9.9e-33 144.4 201 46.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.7e-32 143.7 197 43.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.2e-32 143.3 199 43.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 2.2e-32 143.3 199 44.2
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 2.2e-32 143.3 202 45.5
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.9e-32 142.9 214 43.5
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.8e-32 142.5 200 44.0
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.9e-31 140.2 201 44.8
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.4e-31 139.8 204 44.1
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.4e-31 138.7 197 44.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.4e-31 138.7 179 45.3
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.4e-31 138.7 205 42.4
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-30 137.5 197 43.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.2e-30 137.5 102 67.6
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.1e-30 136.7 201 44.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.7e-30 136.3 222 40.5
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 3.5e-30 136.0 195 42.1
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.3e-29 134.0 124 58.1
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.0e-29 132.9 200 43.0
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.1e-28 131.0 196 42.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.5e-28 130.6 224 40.6
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.9e-28 130.2 102 62.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.9e-28 130.2 197 39.6
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 2.5e-28 129.8 200 41.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 5.6e-28 128.6 198 40.9
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.3e-28 128.3 218 41.3
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 9.6e-28 127.9 200 40.0
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 9.6e-28 127.9 223 37.7
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.2e-27 127.5 200 40.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.6e-27 127.1 215 41.9
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.1e-27 126.7 124 54.0
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.1e-27 126.7 220 40.5
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.1e-27 126.7 200 39.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.8e-27 126.3 211 38.9
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.8e-27 126.3 200 40.5
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 4.7e-27 125.6 102 56.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 4.7e-27 125.6 235 37.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 6.2e-27 125.2 223 41.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 6.2e-27 125.2 202 42.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.1e-26 124.4 203 39.4
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.1e-26 124.4 188 41.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.1e-26 124.4 199 44.2
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.4e-26 124.0 206 38.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.4e-26 124.0 193 38.9
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.8e-26 123.6 223 39.0
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.8e-26 123.6 222 39.6
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.4e-26 123.2 222 38.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.1e-26 122.9 202 37.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.1e-26 122.9 207 37.2
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.1e-26 122.9 202 37.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 4.0e-26 122.5 122 50.8
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 8.9e-26 121.3 205 37.1
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.2e-25 120.9 102 55.9
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.2e-25 120.9 207 36.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-25 120.9 179 49.7
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-25 120.6 85 62.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.0e-25 120.2 187 40.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 2.6e-25 119.8 209 40.2
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 4.4e-25 119.0 233 38.2
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.4e-25 119.0 109 59.6
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 7.6e-25 118.2 202 41.1
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 9.9e-25 117.9 102 52.0
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.3e-24 117.5 205 39.5
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.3e-24 117.5 182 42.3
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-24 117.5 114 57.0
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.7e-24 117.1 221 37.1
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 2.2e-24 116.7 196 40.3
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.9e-24 116.3 181 40.9
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.8e-24 115.9 196 39.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 4.9e-24 115.5 101 58.4
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-23 114.0 114 55.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-23 114.0 196 39.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.9e-23 113.6 200 40.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.9e-23 113.6 222 36.5
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.4e-23 113.2 200 40.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-23 113.2 202 38.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.2e-23 112.8 178 44.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.2e-23 112.8 200 38.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-22 110.9 100 55.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.6e-22 109.0 144 41.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 7.8e-22 108.2 196 36.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.7e-21 107.1 124 49.2
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.7e-21 107.1 183 36.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.0e-21 106.3 223 35.9
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 6.6e-21 105.1 109 47.7
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.1e-20 104.4 221 35.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.3e-20 102.4 120 50.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 7.3e-20 101.7 208 37.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.3e-19 100.9 158 42.4
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.6e-19 100.5 197 36.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 8.1e-19 98.2 154 37.0
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.0e-18 95.9 150 42.7
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 5.3e-18 95.5 77 54.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.3e-18 95.5 55 87.3
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.2e-17 94.4 140 43.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.6e-17 93.2 200 36.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 6.4e-16 88.6 197 34.0
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.4e-15 86.7 65 66.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.2e-15 86.3 175 35.4
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 5.4e-15 85.5 100 47.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 7.9e-14 81.6 98 44.9
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-13 80.9 170 34.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.1e-13 79.0 53 77.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.1e-13 79.0 53 77.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.9e-12 77.0 81 48.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.3e-11 74.3 83 47.0
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-11 73.9 83 48.2
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.4e-10 70.9 44 72.7
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 5.3e-10 68.9 146 35.6
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.1e-06 57.0 82 37.8
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.7e-06 56.6 76 40.8


User provided reference genes

Program Settings