Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.7e-111 406.0 198 100.0
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.8e-98 362.1 198 84.8
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 8.4e-95 350.5 198 85.9
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.1e-84 314.7 197 74.6
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.3e-83 312.0 196 74.5
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 7.3e-83 310.8 195 74.9
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 1.6e-82 309.7 198 73.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-82 309.3 198 72.7
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 71.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 74.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.2e-82 307.8 197 76.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.8e-81 306.2 197 73.6
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 74.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 72.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.8e-81 306.2 197 73.6
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 74.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 71.2
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 4.0e-81 305.1 196 73.5
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 4.0e-81 305.1 197 72.6
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 72.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 73.7
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 72.7
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 2.6e-80 302.4 196 74.5
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 72.7
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 73.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 71.2
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.3e-79 300.1 197 73.1
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.7e-79 299.7 198 72.2
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 70.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 73.1
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.2e-79 299.3 198 72.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.9e-79 298.9 198 70.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.9e-79 298.9 198 70.7
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.9e-79 298.9 196 73.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.8e-79 298.5 143 97.2
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.8e-79 298.5 197 71.1
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 72.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 73.7
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 69.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 6.4e-79 297.7 196 71.9
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 71.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 2.4e-78 295.8 196 71.4
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 69.2
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 70.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 70.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 70.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.1e-77 292.7 198 72.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 72.2
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 70.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 72.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 69.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 7.9e-77 290.8 198 71.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 71.7
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.3e-76 290.0 198 70.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.3e-76 290.0 196 69.4
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.7e-76 289.7 196 69.4
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.7e-76 289.7 188 73.9
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.7e-76 289.7 196 69.4
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 68.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 70.2
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.9e-76 288.5 197 69.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 68.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 8.7e-76 287.3 197 71.1
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 8.7e-76 287.3 197 70.6
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 68.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 70.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 69.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 69.2
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 5.6e-75 284.6 187 72.2
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 68.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.3e-74 283.5 197 65.5
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.1e-74 282.7 194 71.1
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 3.6e-74 282.0 198 69.2
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 4.8e-74 281.6 198 69.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 4.8e-74 281.6 198 69.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.4e-73 280.0 181 74.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.8e-73 279.6 199 67.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.8e-73 279.6 196 65.8
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.4e-73 279.3 198 64.1
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.1e-73 278.9 197 66.5
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 5.3e-73 278.1 198 67.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 5.3e-73 278.1 182 70.9
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.3e-73 278.1 198 67.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 69.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 66.2
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.0e-72 276.2 198 65.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.0e-72 276.2 186 71.5
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.6e-72 275.8 197 65.5
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 3.4e-72 275.4 198 65.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.8e-72 274.6 197 65.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 7.6e-72 274.2 197 66.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.3e-71 273.5 192 68.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.7e-71 273.1 184 69.0
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.9e-71 272.3 198 65.7
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 4.9e-71 271.6 186 71.0
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 8.4e-71 270.8 198 65.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 8.4e-71 270.8 198 64.6
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-70 270.4 184 68.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.1e-70 270.4 184 68.5
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-70 270.4 182 70.9
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 4.2e-70 268.5 198 64.6
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 4.2e-70 268.5 198 64.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 4.2e-70 268.5 199 65.8
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.2e-70 268.5 199 65.3
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.6e-69 266.5 198 64.6
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.1e-69 266.2 197 63.5
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.1e-69 266.2 186 68.8
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 6.0e-69 264.6 196 64.3
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 7.9e-69 264.2 198 65.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 7.9e-69 264.2 198 63.1
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.9e-67 259.6 198 61.6
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 2.5e-67 259.2 198 63.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.3e-66 256.9 196 66.3
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.1e-66 256.1 196 64.3
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.6e-64 249.2 198 61.6
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 4.9e-63 245.0 187 62.0
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.5e-62 241.5 178 64.0
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 9.3e-62 240.7 180 65.0
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.3e-60 236.9 190 60.5
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 2.5e-59 232.6 170 67.1
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.4e-59 231.1 181 62.4
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 3.7e-58 228.8 187 55.6
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.2e-58 227.6 192 57.3
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.1e-54 217.2 144 70.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.7e-53 212.6 144 67.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 7.9e-53 211.1 155 67.1
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.3e-52 209.5 144 63.9
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.3e-52 209.5 191 52.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.0e-52 209.1 197 53.3
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-49 200.7 198 49.5
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 4.1e-49 198.7 156 59.6
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 2.2e-47 193.0 114 77.2
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.7e-42 176.8 198 51.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.7e-42 176.8 188 45.7
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.7e-42 176.8 124 66.9
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 4.1e-41 172.2 199 46.2
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 9.1e-41 171.0 98 79.6
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.9e-36 155.6 188 47.3
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.5e-30 137.1 185 41.1
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 7.7e-24 114.8 186 34.4
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 7.7e-24 114.8 73 65.8
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 3.8e-23 112.5 118 49.2
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.9e-22 110.2 120 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.5e-22 108.6 114 50.9
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.6e-21 107.1 68 72.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.8e-20 103.6 194 37.1
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.0e-20 102.4 112 49.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.1e-17 92.8 81 53.1
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.7e-16 89.7 70 54.3
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.6e-13 79.3 58 69.0
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.1e-06 57.8 43 62.8
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 4.3e-06 55.8 44 59.1


User provided reference genes

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