Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 0.0e+00 1142.1 573 100.0
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.7e-289 998.8 573 88.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 3.8e-257 891.3 626 73.3
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 2.0e-245 852.4 581 75.6
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.1e-232 810.1 626 66.8
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 8.0e-207 724.2 626 60.5
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 3.0e-201 705.7 607 59.6
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 8.6e-201 704.1 630 58.6
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.9e-195 686.4 609 58.8
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.5e-192 676.8 610 58.2
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 6.2e-191 671.4 575 59.7
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 4.0e-190 668.7 596 58.4
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 8.9e-190 667.5 603 57.0
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 3.8e-188 662.1 584 57.5
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 8.4e-188 661.0 590 58.3
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.3e-185 652.9 630 56.0
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 4.7e-183 645.2 607 55.0
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 4.7e-183 645.2 599 55.3
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 8.1e-183 644.4 598 55.4
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 4.0e-182 642.1 604 54.6
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 2.6e-181 639.4 586 58.7
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 5.8e-181 638.3 618 55.8
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 9.9e-181 637.5 593 56.2
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 1.3e-180 637.1 609 55.5
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 3.8e-180 635.6 611 53.4
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 4.9e-180 635.2 583 57.6
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 4.2e-179 632.1 579 57.5
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 1.7e-177 626.7 612 54.7
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.5e-176 623.6 617 53.8
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.3e-176 622.5 582 56.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.6e-175 620.2 599 55.6
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.6e-175 620.2 602 53.8
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 2.1e-175 619.8 572 55.8
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 2.8e-175 619.4 592 55.7
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 8.1e-175 617.8 594 55.2
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 8.1e-175 617.8 590 55.4
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 8.1e-175 617.8 590 55.4
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 9.0e-174 614.4 583 57.3
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.2e-173 614.0 643 51.5
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.5e-173 613.6 590 55.3
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 2.6e-173 612.8 590 54.6
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 3.4e-173 612.5 605 53.2
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 3.4e-173 612.5 605 53.9
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.7e-172 610.1 614 51.8
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 2.2e-172 609.8 614 51.8
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.8e-172 609.0 590 54.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 4.9e-172 608.6 584 55.5
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 1.1e-171 607.4 604 53.0
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 1.4e-171 607.1 590 54.2
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.9e-171 606.7 583 56.9
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.2e-171 605.5 591 55.2
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 7.1e-171 604.7 597 55.6
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 4.6e-170 602.1 532 57.5
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 7.9e-170 601.3 587 55.0
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 7.9e-170 601.3 579 55.1
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 1.0e-169 600.9 594 53.7
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.0e-169 600.9 607 54.2
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.8e-169 600.1 601 54.2
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.3e-169 599.7 597 55.4
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 3.0e-169 599.4 611 52.0
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 8.7e-169 597.8 588 54.1
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 8.7e-169 597.8 608 53.9
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 1.5e-168 597.0 587 54.3
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.9e-168 596.7 589 55.0
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 2.5e-168 596.3 612 53.8
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 4.3e-168 595.5 605 52.9
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 7.4e-168 594.7 587 54.5
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 3.7e-167 592.4 608 53.6
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 4.8e-167 592.0 615 51.5
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 4.8e-167 592.0 581 54.9
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 6.2e-167 591.7 573 53.9
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.8e-166 590.1 612 53.3
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.8e-166 590.1 613 52.4
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.8e-166 590.1 614 52.1
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 5.3e-166 588.6 601 52.2
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 9.0e-166 587.8 614 52.4
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 2.6e-165 586.3 608 50.7
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 3.4e-165 585.9 587 54.3
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.6e-165 584.7 622 51.1
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.9e-163 580.1 611 51.2
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 9.3e-163 577.8 599 52.4
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 6.0e-162 575.1 562 53.0
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.0e-161 574.3 547 57.2
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.3e-161 573.9 595 52.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 5.1e-161 572.0 670 47.5
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.1e-160 570.9 620 50.8
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.6e-159 567.0 605 51.7
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 3.7e-159 565.8 592 50.5
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 4.9e-156 555.4 602 51.5
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 6.5e-156 555.1 608 51.0
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.6e-154 548.9 632 50.0
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 7.9e-154 548.1 511 55.4
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.3e-153 547.4 581 54.6
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.6e-151 540.4 557 50.4
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 4.1e-150 535.8 581 49.1
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 5.9e-149 531.9 596 47.1
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 5.5e-147 525.4 596 49.5
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.3e-145 520.0 558 52.0
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 1.1e-144 517.7 591 50.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 3.3e-144 516.2 600 47.8
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-143 513.8 571 50.6
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.4e-134 484.2 441 54.4
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 4.1e-134 482.6 530 49.8
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 5.9e-133 478.8 623 44.6
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.6e-130 470.7 631 43.6
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 1.5e-123 447.6 565 45.8
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-119 434.5 552 45.7
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 4.0e-113 412.9 441 50.6
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 5.7e-112 409.1 573 43.1
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 4.8e-111 406.0 477 45.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 4.8e-111 406.0 457 46.8
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.4e-110 404.4 343 59.8
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 8.0e-98 362.1 623 36.9
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 3.5e-93 346.7 612 34.6
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 8.9e-81 305.4 557 34.8
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 3.6e-74 283.5 580 32.6
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 8.7e-60 235.7 186 64.0
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 9.6e-59 232.3 210 56.7
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.1e-54 216.1 358 36.0
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-50 204.1 279 39.4
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 3.7e-50 203.8 279 40.5
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 1.2e-48 198.7 237 44.3
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.3e-44 185.3 176 52.8
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.9e-44 183.7 450 27.6
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.5e-38 163.3 278 35.6
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 1.0e-36 159.1 267 38.2
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-33 147.9 287 32.8
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.2e-32 145.6 173 50.3
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 2.6e-24 117.9 74 78.4
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.6e-21 107.5 118 43.2
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-20 105.5 197 33.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 2.3e-20 104.8 193 41.5
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 7.7e-16 89.7 166 33.1
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.7e-15 88.6 47 83.0
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.0e-12 79.3 89 53.9
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.7e-10 72.0 196 34.2
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.8e-10 71.2 142 31.7
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 8.2e-10 69.7 59 54.2


User provided reference genes

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