Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 4.9e-45 184.1 93 100.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.8e-22 107.5 85 70.6
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.6e-22 107.1 85 68.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.7e-21 104.8 85 64.7
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.4e-21 103.6 83 66.3
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.6e-19 99.4 85 62.4
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.7e-19 98.6 88 55.7
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.5e-19 98.2 83 63.9
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.8e-19 97.1 85 60.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.7e-18 95.9 85 60.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.7e-18 95.9 74 68.9
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.7e-18 95.9 81 61.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.7e-18 95.9 88 54.5
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.3e-18 95.5 85 64.7
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.9e-18 94.7 85 63.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.1e-18 94.4 83 61.4
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 5.1e-18 94.4 84 56.0
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.1e-18 94.4 84 59.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.1e-18 94.4 84 59.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.1e-18 94.4 85 61.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.1e-18 94.4 85 61.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 6.6e-18 94.0 85 65.9
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.1e-17 93.2 88 54.5
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-17 92.4 80 65.0
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.9e-17 92.4 69 69.6
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.5e-17 92.0 85 64.7
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 4.3e-17 91.3 89 50.6
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 7.3e-17 90.5 86 52.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 9.6e-17 90.1 85 54.1
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-16 89.7 80 62.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.6e-16 89.4 75 56.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.6e-16 89.4 86 54.7
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.6e-16 89.4 77 58.4
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.1e-16 89.0 85 56.5
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.8e-16 88.6 74 60.8
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.8e-16 88.6 85 55.3
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.8e-16 88.6 87 54.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 2.8e-16 88.6 84 58.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.6e-16 88.2 86 58.1
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 3.6e-16 88.2 67 67.2
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.6e-16 88.2 81 59.3
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.7e-16 87.8 80 61.2
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 4.7e-16 87.8 80 61.2
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 4.7e-16 87.8 81 61.7
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.2e-16 87.4 75 60.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 6.2e-16 87.4 83 59.0
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 8.1e-16 87.0 81 61.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 8.1e-16 87.0 74 59.5
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 8.1e-16 87.0 60 71.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.1e-15 86.7 85 60.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.1e-15 86.7 76 61.8
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.1e-15 86.7 80 60.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.4e-15 86.3 81 60.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.4e-15 86.3 85 55.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.4e-15 85.5 80 63.8
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 3.1e-15 85.1 84 54.8
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 3.1e-15 85.1 85 50.6
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 3.1e-15 85.1 80 62.5
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.1e-15 85.1 80 57.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 3.1e-15 85.1 77 61.0
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 4.0e-15 84.7 81 59.3
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.0e-15 84.7 86 55.8
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.0e-15 84.7 80 58.8
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.0e-15 84.7 80 57.5
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.2e-15 84.3 85 57.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 5.2e-15 84.3 75 61.3
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.2e-15 84.3 80 57.5
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 6.8e-15 84.0 80 58.8
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 8.9e-15 83.6 79 62.0
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 8.9e-15 83.6 83 55.4
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 8.9e-15 83.6 72 58.3
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.2e-14 83.2 70 55.7
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.2e-14 83.2 76 57.9
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.2e-14 83.2 80 58.8
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.5e-14 82.8 79 57.0
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.5e-14 82.8 80 58.8
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.5e-14 82.8 86 54.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.5e-14 82.8 86 54.7
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.5e-14 82.8 79 60.8
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.0e-14 82.4 79 57.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.0e-14 82.4 77 57.1
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.0e-14 82.4 80 60.0
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.0e-14 82.4 77 58.4
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.0e-14 82.4 87 54.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.6e-14 82.0 79 60.8
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-14 82.0 76 57.9
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-14 82.0 76 57.9
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 2.6e-14 82.0 76 57.9
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.6e-14 82.0 74 55.4
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 3.4e-14 81.6 85 55.3
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 3.4e-14 81.6 80 58.8
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.4e-14 81.6 86 54.7
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.4e-14 81.6 77 63.6
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 4.4e-14 81.3 79 53.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.8e-14 80.9 86 53.5
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 5.8e-14 80.9 79 58.2
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 5.8e-14 80.9 79 58.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.6e-14 80.5 83 56.6
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.3e-13 79.7 82 56.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.7e-13 79.3 74 54.1
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.2e-13 79.0 56 73.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.9e-13 78.6 80 55.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.9e-13 78.6 82 51.2
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.9e-13 78.6 81 55.6
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 3.8e-13 78.2 83 54.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.8e-13 78.2 71 59.2
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.8e-13 78.2 80 51.2
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.8e-13 78.2 82 52.4
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 3.8e-13 78.2 75 56.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 3.8e-13 78.2 80 55.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 4.9e-13 77.8 87 54.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 4.9e-13 77.8 77 55.8
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.4e-13 77.4 85 49.4
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-12 76.6 67 56.7
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 78 51.3
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-12 76.6 85 55.3
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.9e-12 75.9 86 52.3
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.9e-12 75.9 71 54.9
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.2e-12 75.1 66 57.6
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.2e-12 75.1 74 50.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.4e-12 74.3 56 69.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 5.4e-12 74.3 84 51.2
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 9.3e-12 73.6 83 53.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.2e-11 73.2 47 78.7
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.6e-11 72.8 90 47.8
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.1e-11 72.4 89 48.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.5e-11 71.6 81 53.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 4.6e-11 71.2 73 52.1
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 4.6e-11 71.2 86 50.0
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 6.0e-11 70.9 76 55.3
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 6.0e-11 70.9 85 50.6
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.0e-10 70.1 85 47.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 6.6e-10 67.4 54 64.8
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.6e-10 67.4 54 64.8
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.7e-10 67.0 44 75.0
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.7e-10 67.0 76 53.9
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.5e-09 65.5 80 48.8
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 9.6e-09 63.5 82 50.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.3e-08 63.2 66 48.5
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.6e-08 62.8 35 85.7
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.1e-08 62.4 47 72.3
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.8e-08 62.0 78 46.2
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.8e-08 61.2 40 75.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.8e-08 61.2 40 75.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.8e-08 61.2 40 75.0
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 4.0e-07 58.2 82 47.6
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.2e-06 56.6 72 43.1
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.0e-06 55.8 86 43.0
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.0e-06 55.8 70 41.4
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 2.6e-06 55.5 85 42.4
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.6e-06 55.5 31 90.3
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 5.8e-06 54.3 86 45.3
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 9.9e-06 53.5 79 45.6
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.9e-06 53.5 87 35.6
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.9e-06 53.5 87 35.6


User provided reference genes

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