Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.5e-46 188.0 96 100.0
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.9e-32 141.0 96 72.9
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.2e-26 120.9 91 64.8
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 3.4e-25 118.2 91 62.6
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 4.4e-25 117.9 96 62.5
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 7.5e-25 117.1 95 60.0
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 2.2e-24 115.5 91 61.5
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 2.9e-24 115.2 95 63.2
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.9e-24 115.2 87 62.1
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.9e-24 115.2 91 62.6
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 3.7e-24 114.8 94 59.6
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 3.7e-24 114.8 91 59.3
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.7e-24 114.8 80 66.2
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.9e-24 114.4 91 61.5
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 6.4e-24 114.0 96 61.5
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 6.4e-24 114.0 96 61.5
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 6.4e-24 114.0 95 61.1
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.1e-23 113.2 92 57.6
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.1e-23 113.2 92 57.6
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 1.1e-23 113.2 91 60.4
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.1e-23 113.2 96 60.4
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 1.4e-23 112.8 91 61.5
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.4e-23 112.8 92 64.1
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.4e-23 112.8 91 59.3
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.4e-23 112.1 91 56.0
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.4e-23 112.1 95 61.1
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 3.2e-23 111.7 94 58.5
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 4.1e-23 111.3 91 56.0
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.4e-23 110.9 91 54.9
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 5.4e-23 110.9 91 54.9
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 5.4e-23 110.9 96 59.4
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 7.1e-23 110.5 95 64.2
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 9.2e-23 110.2 96 60.4
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 9.2e-23 110.2 96 60.4
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 9.2e-23 110.2 92 60.9
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 9.2e-23 110.2 91 60.4
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 1.2e-22 109.8 96 60.4
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 1.2e-22 109.8 91 58.2
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.2e-22 109.8 91 58.2
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.2e-22 109.8 93 60.2
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.2e-22 109.8 93 60.2
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 1.2e-22 109.8 82 61.0
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.2e-22 109.8 92 58.7
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.2e-22 109.8 95 60.0
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.6e-22 109.4 91 59.3
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.6e-22 109.4 95 60.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-22 109.4 93 59.1
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-22 109.4 93 59.1
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.6e-22 109.4 93 59.1
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.6e-22 109.4 87 63.2
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.6e-22 109.4 95 58.9
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 2.1e-22 109.0 94 61.7
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.1e-22 109.0 91 59.3
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 2.1e-22 109.0 91 58.2
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.1e-22 109.0 91 58.2
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.1e-22 109.0 91 58.2
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 2.1e-22 109.0 96 56.2
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.1e-22 109.0 91 56.0
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.7e-22 108.6 91 59.3
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.7e-22 108.6 91 57.1
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.7e-22 108.6 96 62.5
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.7e-22 108.6 92 57.6
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 2.7e-22 108.6 96 59.4
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.5e-22 108.2 91 57.1
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 4.6e-22 107.8 96 60.4
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.6e-22 107.8 96 57.3
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.6e-22 107.8 96 60.4
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 6.0e-22 107.5 91 58.2
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 6.0e-22 107.5 96 58.3
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 6.0e-22 107.5 91 54.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 6.0e-22 107.5 96 59.4
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 7.8e-22 107.1 91 57.1
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 7.8e-22 107.1 96 56.2
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 7.8e-22 107.1 95 56.8
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.0e-21 106.7 92 57.6
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.0e-21 106.7 91 59.3
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 1.0e-21 106.7 96 55.2
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.0e-21 106.7 91 57.1
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.0e-21 106.7 96 60.4
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.3e-21 106.3 96 61.5
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 1.3e-21 106.3 96 58.3
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.3e-21 106.3 91 59.3
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.3e-21 106.3 95 60.0
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.3e-21 106.3 95 61.1
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.3e-21 106.3 96 56.2
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.3e-21 106.3 91 56.0
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.7e-21 105.9 91 56.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.7e-21 105.9 88 61.4
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-21 105.9 91 54.9
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-21 105.9 91 54.9
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 2.3e-21 105.5 96 57.3
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.3e-21 105.5 92 57.6
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.3e-21 105.5 91 57.1
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 2.3e-21 105.5 91 56.0
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.3e-21 105.5 91 57.1
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 3.0e-21 105.1 96 59.4
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.9e-21 104.8 96 57.3
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.9e-21 104.8 79 62.0
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 5.1e-21 104.4 95 54.7
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.1e-21 104.4 90 57.8
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 6.6e-21 104.0 96 57.3
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 6.6e-21 104.0 96 54.2
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.6e-21 104.0 91 53.8
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 1.1e-20 103.2 95 55.8
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.1e-20 103.2 79 58.2
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 1.1e-20 103.2 93 54.8
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.1e-20 103.2 95 56.8
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.1e-20 103.2 102 57.8
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.1e-20 103.2 77 62.3
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.1e-20 103.2 77 62.3
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.5e-20 102.8 91 53.8
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.5e-20 102.8 96 55.2
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.5e-20 102.8 96 56.2
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 2.5e-20 102.1 79 62.0
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 2.5e-20 102.1 93 57.0
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 2.5e-20 102.1 79 62.0
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.5e-20 102.1 92 57.6
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 3.3e-20 101.7 91 57.1
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 3.3e-20 101.7 96 57.3
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 3.3e-20 101.7 96 56.2
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.3e-20 101.3 92 55.4
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 4.3e-20 101.3 91 57.1
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.6e-20 100.9 91 53.8
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 7.3e-20 100.5 91 52.7
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 7.3e-20 100.5 91 54.9
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 9.5e-20 100.1 92 56.5
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 9.5e-20 100.1 80 58.8
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 9.5e-20 100.1 95 55.8
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 9.5e-20 100.1 81 58.0
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 9.5e-20 100.1 96 55.2
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.2e-19 99.8 91 54.9
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.2e-19 99.8 95 58.9
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 1.6e-19 99.4 91 56.0
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 1.6e-19 99.4 91 56.0
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.6e-19 99.4 91 53.8
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 2.1e-19 99.0 91 56.0
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.1e-19 99.0 92 56.5
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 2.8e-19 98.6 95 54.7
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 8.1e-19 97.1 92 54.3
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.1e-18 96.7 97 52.6
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.8e-18 95.9 87 56.3
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.8e-18 95.9 92 51.1
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.3e-18 95.5 80 57.5
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.3e-18 95.5 92 48.9
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 6.8e-18 94.0 83 56.6
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 8.9e-18 93.6 86 52.3
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-17 93.2 86 51.2
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.5e-17 92.8 91 50.5
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 2.6e-17 92.0 84 56.0
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 7.6e-17 90.5 79 57.0
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 9.9e-17 90.1 78 55.1
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 4.9e-16 87.8 78 53.8
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 1.4e-15 86.3 84 57.1
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 4.1e-15 84.7 96 47.9
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 4.1e-15 84.7 84 53.6
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 5.4e-15 84.3 98 46.9
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.1e-15 84.0 99 46.5
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.2e-14 83.2 97 48.5
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.6e-14 82.8 83 51.8
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.6e-14 82.8 64 57.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 1.7e-13 79.3 99 38.4
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-11 72.8 76 52.6
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.2e-11 70.9 61 54.1
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.8e-10 69.3 67 44.8
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 5.2e-10 67.8 72 47.2
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 5.2e-10 67.8 52 67.3
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 5.2e-10 67.8 52 67.3
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.2e-09 66.6 71 40.8
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.4e-09 65.1 73 38.4
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.2e-07 58.5 69 36.2
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 7.1e-07 57.4 61 39.3
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.1e-06 55.8 66 37.9
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 3.5e-06 55.1 47 51.1
SEGI_28711 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 3.5e-06 55.1 45 53.3


User provided reference genes

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