Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G125 Amborella trichopoda HOM05D004243 ORTHO05D005018 1.6e-118 429.5 222 100.0
TAR381G1198 Trochodendron aralioides HOM05D004243 ORTHO05D005018 1.1e-31 141.0 78 82.1
EL10Ac7g17973 Beta vulgaris HOM05D004243 ORTHO05D005018 3.3e-31 139.4 87 74.7
Dinv28826 Davidia involucrata HOM05D004243 ORTHO05D005018 3.3e-31 139.4 89 71.9
Nn5g27088 Nelumbo nucifera HOM05D004243 ORTHO05D005018 3.3e-31 139.4 98 69.4
SalBow3G3517 Salvia bowleyana HOM05D004243 ORTHO05D005018 3.3e-31 139.4 88 75.0
Hund05596 Selenicereus undatus HOM05D004243 ORTHO05D005018 4.3e-31 139.0 87 75.9
CSS0027325 Camellia sinensis var. sinensis HOM05D004243 ORTHO05D005018 5.6e-31 138.7 87 73.6
Migut.N00649 Erythranthe guttata HOM05D004243 ORTHO05D005018 9.5e-31 137.9 88 73.9
MSTRG.17980 Avicennia marina HOM05D004243 ORTHO05D005018 2.1e-30 136.7 91 71.4
MBI06_g17061_MAGBIO Magnolia biondii HOM05D004243 ORTHO05D005018 2.1e-30 136.7 81 77.8
Haze_03321 Corylus avellana HOM05D004243 ORTHO05D005018 2.8e-30 136.3 89 73.0
Nitab4.5_0000296g0140 Nicotiana tabacum HOM05D004243 ORTHO05D005018 2.8e-30 136.3 83 74.7
TWI36G0370 Tripterygium wilfordii HOM05D004243 ORTHO05D005018 2.8e-30 136.3 95 70.5
SGA_v2.0_scaffold77G25281 Striga asiatica HOM05D004243 ORTHO05D005018 3.6e-30 136.0 77 77.9
Actinidia09449 Actinidia chinensis HOM05D004243 ORTHO05D005018 4.7e-30 135.6 76 78.9
SEGI_05764 Sequoiadendron giganteum HOM05D004243 ORTHO05D005018 4.7e-30 135.6 80 76.2
vmacro02805 Vaccinium macrocarpon HOM05D004243 ORTHO05D005018 4.7e-30 135.6 76 80.3
HPP92_004512 Vanilla planifolia HOM05D004243 ORTHO05D005018 6.2e-30 135.2 93 71.0
Gohir.A07G160100 Gossypium hirsutum HOM05D004243 ORTHO05D005018 8.1e-30 134.8 87 72.4
Manes.12G051400 Manihot esculenta HOM05D004243 ORTHO05D005018 8.1e-30 134.8 89 69.7
Hund18474 Selenicereus undatus HOM05D004243 ORTHO05D005018 8.1e-30 134.8 76 81.6
Sc24g0003410 Simmondsia chinensis HOM05D004243 ORTHO05D005018 8.1e-30 134.8 87 73.6
Gohir.D07G166200 Gossypium hirsutum HOM05D004243 ORTHO05D005018 1.1e-29 134.4 87 72.4
Gorai.N004500 Gossypium raimondii HOM05D004243 ORTHO05D005018 1.1e-29 134.4 87 72.4
Duzib133G0582 Durio zibethinus HOM05D004243 ORTHO05D005018 1.4e-29 134.0 87 70.1
Glyma.03G088400 Glycine max HOM05D004243 ORTHO05D005018 1.4e-29 134.0 93 68.8
Lj3g0027333 Lotus japonicus HOM05D004243 ORTHO05D005018 1.4e-29 134.0 76 77.6
AUR62022149 Chenopodium quinoa HOM05D004243 ORTHO05D005018 1.8e-29 133.7 76 80.3
Mapoly0011s0187 Marchantia polymorpha HOM05D004243 ORTHO05D005018 1.8e-29 133.7 92 68.5
Nitab4.5_0010482g0010 Nicotiana tabacum HOM05D004243 ORTHO05D005018 1.8e-29 133.7 92 69.6
Duzib138G0591 Durio zibethinus HOM05D004243 ORTHO05D005018 2.3e-29 133.3 76 78.9
Nitab4.5_0014406g0010 Nicotiana tabacum HOM05D004243 ORTHO05D005018 2.3e-29 133.3 84 72.6
TPR.G29357 Trifolium pratense HOM05D004243 ORTHO05D005018 2.3e-29 133.3 76 78.9
Glyma.16G085100 Glycine max HOM05D004243 ORTHO05D005018 4.0e-29 132.5 76 77.6
Solyc06g083150.3 Solanum lycopersicum HOM05D004243 ORTHO05D005018 4.0e-29 132.5 92 69.6
Sopen06g034540 Solanum pennellii HOM05D004243 ORTHO05D005018 4.0e-29 132.5 92 69.6
ECA248G1394 Erigeron canadensis HOM05D004243 ORTHO05D005018 5.2e-29 132.1 86 73.3
Ah.08g218810 Amaranthus hybridus HOM05D004243 ORTHO05D005018 6.8e-29 131.7 91 69.2
ClCG07G002160 Citrullus lanatus HOM05D004243 ORTHO05D005018 6.8e-29 131.7 81 76.5
Lsat_1_v5_gn_5_178640 Lactuca sativa HOM05D004243 ORTHO05D005018 6.8e-29 131.7 87 73.6
Oeu003652.1 Olea europaea HOM05D004243 ORTHO05D005018 6.8e-29 131.7 75 76.0
PGSC0003DMG400020175 Solanum tuberosum HOM05D004243 ORTHO05D005018 6.8e-29 131.7 84 72.6
Atru.chr6.1590 Acer truncatum HOM05D004243 ORTHO05D005018 8.9e-29 131.3 87 69.0
CsaV3_3G030120 Cucumis sativus L. HOM05D004243 ORTHO05D005018 8.9e-29 131.3 92 69.6
Phvul.010G029900 Phaseolus vulgaris HOM05D004243 ORTHO05D005018 8.9e-29 131.3 93 66.7
SGA_v2.0_scaffold95G28710 Striga asiatica HOM05D004243 ORTHO05D005018 8.9e-29 131.3 87 70.1
arahy.Tifrunner.gnm1.ann1.C3KWK0 Arachis hypogaea HOM05D004243 ORTHO05D005018 1.2e-28 131.0 87 71.3
Rhsim13G0051200 Rhododendron simsii HOM05D004243 ORTHO05D005018 1.2e-28 131.0 76 80.3
Sed0023145 Sechium edule HOM05D004243 ORTHO05D005018 1.2e-28 131.0 76 77.6
Ciclev10032341m.g Citrus clementina HOM05D004243 ORTHO05D005018 1.5e-28 130.6 76 76.3
HanXRQChr04g0095171 Helianthus annuus HOM05D004243 ORTHO05D005018 1.5e-28 130.6 90 72.2
Oeu057843.1 Olea europaea HOM05D004243 ORTHO05D005018 1.5e-28 130.6 80 72.5
THA.LOC104818989 Tarenaya hassleriana HOM05D004243 ORTHO05D005018 1.5e-28 130.6 89 68.5
arahy.Tifrunner.gnm1.ann1.B3QQP1 Arachis hypogaea HOM05D004243 ORTHO05D005018 2.0e-28 130.2 76 77.6
Cpa.g.sc8.96 Carica papaya HOM05D004243 ORTHO05D005018 2.0e-28 130.2 87 70.1
DCAR_012688 Daucus carota HOM05D004243 ORTHO05D005018 2.0e-28 130.2 83 73.5
Peaxi162Scf00054g01110 Petunia axillaris HOM05D004243 ORTHO05D005018 2.0e-28 130.2 92 67.4
VMungo0331G0024 Vigna mungo HOM05D004243 ORTHO05D005018 2.0e-28 130.2 76 75.0
Actinidia30024 Actinidia chinensis HOM05D004243 ORTHO05D005018 3.4e-28 129.4 76 75.0
TWI18G0674 Tripterygium wilfordii HOM05D004243 ORTHO05D005018 3.4e-28 129.4 85 70.6
unitig_46.g18245 Utricularia gibba HOM05D001125 ORTHO05D003189 3.4e-28 129.4 87 71.3
AUR62001176 Chenopodium quinoa HOM05D004243 ORTHO05D005018 4.4e-28 129.0 93 69.9
vmacro14707 Vaccinium macrocarpon HOM05D004243 ORTHO05D005018 4.4e-28 129.0 81 72.8
Psat4g205440 Pisum sativum HOM05D004243 ORTHO05D005018 7.6e-28 128.3 92 66.3
QL09p048906 Quercus lobata HOM05D004243 ORTHO05D005018 7.6e-28 128.3 75 80.0
SMO367G1256 Selaginella moellendorffii HOM05D004243 ORTHO05D005018 7.6e-28 128.3 90 68.9
CAN.G874.23 Capsicum annuum HOM05D004243 ORTHO05D005018 1.3e-27 127.5 73 76.7
Lalb_Chr07g0194471 Lupinus albus HOM05D004243 ORTHO05D005018 1.7e-27 127.1 76 73.7
Cc01_g16370 Coffea canephora HOM05D004243 ORTHO05D005018 2.2e-27 126.7 87 67.8
MD10G1154400 Malus domestica HOM05D004243 ORTHO05D005018 2.2e-27 126.7 88 68.2
MSTRG.18817 Avicennia marina HOM05D004243 ORTHO05D005018 2.9e-27 126.3 87 67.8
Eucgr.K02106 Eucalyptus grandis HOM05D004243 ORTHO05D005018 2.9e-27 126.3 91 64.8
Hma1.2p1_1492F.1_g286760 Hydrangea macrophylla HOM05D004243 ORTHO05D005018 2.9e-27 126.3 87 67.8
Sed0000335 Sechium edule HOM05D004243 ORTHO05D005018 2.9e-27 126.3 87 67.8
Aa31sc160G10 Aethionema arabicum HOM05D004243 ORTHO05D005018 3.8e-27 125.9 72 75.0
Manes.13G052500 Manihot esculenta HOM05D004243 ORTHO05D005018 3.8e-27 125.9 87 67.8
Lsat_1_v5_gn_9_17921 Lactuca sativa HOM05D004243 ORTHO05D005018 8.4e-27 124.8 76 75.0
Ca_23194_v3 Cicer arietinum L. HOM05D004243 ORTHO05D005018 1.1e-26 124.4 76 73.7
Gohir.A11G141100 Gossypium hirsutum HOM05D004243 ORTHO05D005018 1.9e-26 123.6 89 67.4
Mapoly0073s0013 Marchantia polymorpha HOM05D004243 ORTHO05D005018 1.9e-26 123.6 76 72.4
Zm00001eb260730 Zea mays HOM05D004243 ORTHO05D005018 1.9e-26 123.6 91 64.8
A05p40830 Brassica napus HOM05D004243 ORTHO05D005018 2.4e-26 123.2 89 67.4
BraA05t22813Z Brassica rapa HOM05D004243 ORTHO05D005018 2.4e-26 123.2 89 67.4
C05p59920 Brassica napus HOM05D004243 ORTHO05D005018 3.2e-26 122.9 89 67.4
BolC5t34648H Brassica oleracea HOM05D004243 ORTHO05D005018 3.2e-26 122.9 89 67.4
Medtr8g011720 Medicago truncatula HOM05D004243 ORTHO05D005018 3.2e-26 122.9 87 66.7
Sp3g06310 Schrenkiella parvula HOM05D004243 ORTHO05D005018 3.2e-26 122.9 85 70.6
BcaB03g14705 Brassica carinata HOM05D004243 ORTHO05D005018 4.1e-26 122.5 84 70.2
Phvul.008G134500 Phaseolus vulgaris HOM05D004243 ORTHO05D005018 4.1e-26 122.5 84 70.2
Lsat_1_v5_gn_5_62140 Lactuca sativa HOM05D004243 ORTHO05D005018 5.4e-26 122.1 76 72.4
MD05G1165100 Malus domestica HOM05D004243 ORTHO05D005018 5.4e-26 122.1 77 72.7
BcaC01g04288 Brassica carinata HOM05D004243 ORTHO05D005018 1.2e-25 120.9 84 69.0
CDE04G3536 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 1.2e-25 120.9 92 60.9
Lalb_Chr12g0210021 Lupinus albus HOM05D004243 ORTHO05D005018 1.6e-25 120.6 73 72.6
Aqoxy6G00008 Aquilegia oxysepala HOM05D004243 ORTHO05D005018 2.1e-25 120.2 75 72.0
CDE02G2083 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 2.1e-25 120.2 86 61.6
Thhalv10021313m.g Eutrema salsugineum HOM05D004243 ORTHO05D005018 2.1e-25 120.2 84 69.0
HanXRQChr07g0193101 Helianthus annuus HOM05D004243 ORTHO05D005018 2.7e-25 119.8 71 77.5
PSO017G4681 Papaver somniferum HOM05D004243 ORTHO05D005018 3.5e-25 119.4 86 65.1
CANSAT01G3145 Cannabis sativa HOM05D004243 ORTHO05D005018 7.8e-25 118.2 80 68.8
PSO170G6432 Papaver somniferum HOM05D004243 ORTHO05D005018 7.8e-25 118.2 86 62.8
Os08g0113300 Oryza sativa ssp. japonica HOM05D004243 ORTHO05D005018 1.0e-24 117.9 83 66.3
PGR044G2657 Punica granatum HOM05D004243 ORTHO05D005018 2.3e-24 116.7 71 71.8
FvH4_2g18060 Fragaria vesca HOM05D004243 ORTHO05D005018 3.0e-24 116.3 89 64.0
FAN15G3004 Fragaria x ananassa HOM05D004243 ORTHO05D005018 3.0e-24 116.3 89 64.0
FAN24G1844 Fragaria x ananassa HOM05D004243 ORTHO05D005018 3.9e-24 115.9 81 67.9
GSVIVG01002499001 Vitis vinifera HOM05D004243 ORTHO05D005018 3.9e-24 115.9 66 78.8
Sabra02G0189400 Salix brachista HOM05D004243 ORTHO05D005018 5.1e-24 115.5 87 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2277 Anthoceros agrestis HOM05D004243 ORTHO05D005018 6.6e-24 115.2 72 69.4
Potri.002G248700 Populus trichocarpa HOM05D004243 ORTHO05D005018 8.6e-24 114.8 87 64.4
CBR_g45609 Chara braunii HOM05D004243 ORTHO05D005018 1.1e-23 114.4 75 68.0
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 2.5e-23 113.2 82 64.6
AT3G07370 Arabidopsis thaliana HOM05D004243 ORTHO05D005018 5.6e-23 112.1 89 60.7
CSS0004420 Camellia sinensis var. sinensis HOM05D004243 ORTHO05D005018 7.3e-23 111.7 78 64.1
Carub.0003s0692 Capsella rubella HOM05D004243 ORTHO05D005018 7.3e-23 111.7 78 65.4
AL3G18670 Arabidopsis lyrata HOM05D004243 ORTHO05D005018 1.6e-22 110.5 89 59.6
Prupe.8G193300 Prunus persica HOM05D004243 ORTHO05D005018 2.1e-22 110.2 88 59.1
Pp3c10_2570 Physcomitrium patens HOM05D004243 ORTHO05D005018 2.8e-22 109.8 75 64.0
Pp3c14_2850 Physcomitrium patens HOM05D004243 ORTHO05D005018 8.1e-22 108.2 75 62.7
CARHR082020 Cardamine hirsuta HOM05D004243 ORTHO05D005018 1.1e-21 107.8 89 59.6
BcaC05g29732 Brassica carinata HOM05D004243 ORTHO05D005018 2.4e-21 106.7 115 50.4
VMungo1383G0802 Vigna mungo HOM05D004243 ORTHO05D005018 3.1e-21 106.3 93 57.0
FAN27G1907 Fragaria x ananassa HOM05D004243 ORTHO05D005018 6.9e-21 105.1 102 54.9
Zm00001eb267460 Zea mays HOM05D004243 ORTHO05D005018 1.5e-20 104.0 74 67.6
Os05g0104900 Oryza sativa ssp. japonica HOM05D004243 ORTHO05D005018 5.8e-20 102.1 112 52.7
CDE08G0461 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 8.4e-19 98.2 69 65.2
SEGI_12733 Sequoiadendron giganteum HOM05D004243 ORTHO05D005018 9.3e-18 94.7 74 60.8
RcHm_v2.0_Chr6g0283451 Rosa chinensis HOM05D004243 ORTHO05D005018 1.6e-17 94.0 71 62.0
THA.LOC104802655 Tarenaya hassleriana HOM05D004243 ORTHO05D005018 2.1e-17 93.6 84 52.4
CDE02G2920 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 2.3e-16 90.1 69 59.4
GSVIVG01003018001 Vitis vinifera HOM05D004243 ORTHO05D005018 1.6e-14 84.0 56 67.9
Peaxi162Scf01133g00024 Petunia axillaris HOM05D004243 ORTHO05D005018 4.8e-14 82.4 43 83.7
MCO04G176 Micromonas commoda HOM05D004243 ORTHO05D005018 1.1e-13 81.3 76 50.0
Lsat_1_v5_gn_4_42981 Lactuca sativa HOM05D004243 ORTHO05D005018 2.4e-13 80.1 58 67.2
CDE04G2706 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 9.0e-13 78.2 70 50.0
MELO3C022725.2 Cucumis melo HOM05D004243 ORTHO05D005018 1.5e-12 77.4 92 50.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.6e-12 76.6 47 68.1
HPP92_004555 Vanilla planifolia HOM05D004243 ORTHO05D005018 2.6e-12 76.6 139 41.0
CDE08G0299 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 3.4e-12 76.3 68 51.5
CDE07G0764 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 2.9e-11 73.2 70 48.6
Cre11.g479650 Chlamydomonas reinhardtii HOM05D004243 ORTHO05D005018 2.9e-11 73.2 76 50.0
CDE02G4582 Ceratophyllum demersum HOM05D004243 ORTHO05D005018 1.1e-10 71.2 68 48.5
SEGI_26081 Sequoiadendron giganteum HOM05D004243 ORTHO05D005018 2.1e-09 67.0 49 61.2
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 2.3e-08 63.5 72 40.3
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 6.7e-08 62.0 70 40.0
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 8.7e-08 61.6 75 41.3
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 4.3e-07 59.3 70 41.4
VMungo0251G0933 Vigna mungo HOM05D001310 ORTHO05D001283 5.6e-07 58.9 75 40.0
CBR_g36926 Chara braunii HOM05D001310 ORTHO05D001283 7.4e-07 58.5 79 38.0
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 9.6e-07 58.2 70 40.0
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 9.6e-07 58.2 70 40.0
SMO165G0113 Selaginella moellendorffii HOM05D004243 ORTHO05D005018 1.3e-06 57.8 90 36.7
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 1.3e-06 57.8 83 39.8
Zm00001eb255310 Zea mays HOM05D001310 ORTHO05D001283 1.3e-06 57.8 70 42.9
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 1.6e-06 57.4 65 43.1
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 1.6e-06 57.4 70 40.0
Phvul.002G330000 Phaseolus vulgaris HOM05D001310 ORTHO05D001283 1.6e-06 57.4 75 38.7
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 1.6e-06 57.4 73 39.7
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 2.1e-06 57.0 70 41.4
PGR042G0443 Punica granatum HOM05D005920 ORTHO05D007211 2.1e-06 57.0 65 44.6
SMO338G0018 Selaginella moellendorffii HOM05D001310 ORTHO05D001283 2.1e-06 57.0 79 36.7
Solyc03g118690.4 Solanum lycopersicum HOM05D001310 ORTHO05D001283 2.1e-06 57.0 70 41.4
PGSC0003DMG400005752 Solanum tuberosum HOM05D001310 ORTHO05D001283 2.1e-06 57.0 70 41.4
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 3.6e-06 56.2 72 37.5
Os02g0754500 Oryza sativa ssp. japonica HOM05D001310 ORTHO05D001283 3.6e-06 56.2 70 40.0
SGA_v2.0_scaffold172G39014 Striga asiatica HOM05D001310 ORTHO05D001283 3.6e-06 56.2 70 41.4
THA.LOC104820350 Tarenaya hassleriana HOM05D001310 ORTHO05D001283 3.6e-06 56.2 75 37.3
Sopen03g037650 Solanum pennellii HOM05D001310 ORTHO05D001283 4.8e-06 55.8 70 41.4
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 6.2e-06 55.5 79 38.0
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 6.2e-06 55.5 70 38.6
Psat4g001480 Pisum sativum HOM05D001310 ORTHO05D001283 6.2e-06 55.5 75 37.3
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 6.2e-06 55.5 79 36.7
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 8.1e-06 55.1 78 38.5
Gorai.007G003700 Gossypium raimondii HOM05D001310 ORTHO05D001283 8.1e-06 55.1 79 36.7


User provided reference genes

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