Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 6.5e-54 213.8 106 100.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.7e-25 119.4 106 61.3
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 8.3e-25 117.1 106 61.3
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 2.4e-24 115.5 106 61.3
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 9.2e-24 113.6 106 58.5
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.6e-23 112.8 108 56.5
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 2.0e-23 112.5 108 57.4
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.7e-23 112.1 108 56.5
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.6e-23 111.3 106 59.4
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.0e-23 110.9 110 57.3
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.0e-23 110.9 110 57.3
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 6.0e-23 110.9 110 57.3
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 6.0e-23 110.9 105 57.1
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.3e-22 109.8 108 56.5
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 1.3e-22 109.8 106 57.5
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.7e-22 109.4 108 55.6
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 2.3e-22 109.0 106 56.6
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 3.0e-22 108.6 110 56.4
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 3.9e-22 108.2 113 54.9
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 5.0e-22 107.8 106 55.7
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 5.0e-22 107.8 109 56.0
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 6.6e-22 107.5 110 56.4
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 8.6e-22 107.1 110 55.5
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 8.6e-22 107.1 109 55.0
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 8.6e-22 107.1 109 56.0
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 8.6e-22 107.1 109 55.0
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 8.6e-22 107.1 109 55.0
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.1e-21 106.7 110 55.5
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.1e-21 106.7 108 55.6
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.1e-21 106.7 103 58.3
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 1.1e-21 106.7 112 57.1
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.1e-21 106.7 106 58.5
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.1e-21 106.7 106 51.9
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 1.5e-21 106.3 108 52.8
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.5e-21 106.3 67 77.6
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.5e-21 106.3 106 56.6
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.5e-21 106.3 106 57.5
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.9e-21 105.9 108 54.6
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 1.9e-21 105.9 109 56.0
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 2.5e-21 105.5 109 58.7
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 3.3e-21 105.1 107 56.1
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.3e-21 105.1 109 56.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.3e-21 104.8 101 60.4
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 4.3e-21 104.8 106 52.8
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 5.6e-21 104.4 77 70.1
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 7.3e-21 104.0 106 55.7
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 7.3e-21 104.0 68 76.5
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 7.3e-21 104.0 109 54.1
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 9.5e-21 103.6 108 55.6
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 9.5e-21 103.6 108 55.6
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 9.5e-21 103.6 102 58.8
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 1.2e-20 103.2 106 53.8
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.2e-20 103.2 106 55.7
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 1.2e-20 103.2 108 56.5
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.6e-20 102.8 108 51.9
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.1e-20 102.4 110 55.5
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.1e-20 102.4 106 55.7
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.1e-20 102.4 64 75.0
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 2.1e-20 102.4 64 75.0
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 2.1e-20 102.4 102 54.9
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.6e-20 101.7 58 79.3
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 3.6e-20 101.7 107 56.1
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 4.7e-20 101.3 108 50.9
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 4.7e-20 101.3 109 52.3
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 4.7e-20 101.3 109 52.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 4.7e-20 101.3 111 54.1
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 6.2e-20 100.9 108 54.6
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 6.2e-20 100.9 108 54.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 6.2e-20 100.9 109 52.3
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 8.1e-20 100.5 109 52.3
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 8.1e-20 100.5 106 50.0
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 8.1e-20 100.5 107 53.3
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 8.1e-20 100.5 107 53.3
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 8.1e-20 100.5 107 53.3
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 1.1e-19 100.1 106 54.7
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.1e-19 100.1 104 51.9
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.1e-19 100.1 108 52.8
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.1e-19 100.1 108 54.6
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 1.4e-19 99.8 108 50.9
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.4e-19 99.8 108 52.8
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.8e-19 99.4 107 52.3
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 1.8e-19 99.4 106 50.0
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 2.3e-19 99.0 108 52.8
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 3.1e-19 98.6 106 51.9
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 3.1e-19 98.6 110 54.5
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.1e-19 98.6 107 54.2
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 4.0e-19 98.2 108 50.9
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 4.0e-19 98.2 108 50.9
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 4.0e-19 98.2 108 54.6
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 4.0e-19 98.2 103 52.4
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 6.8e-19 97.4 107 52.3
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 6.8e-19 97.4 107 52.3
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 6.8e-19 97.4 107 52.3
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 6.8e-19 97.4 106 50.0
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 6.8e-19 97.4 108 50.0
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 6.8e-19 97.4 106 51.9
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 8.9e-19 97.1 108 50.0
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 8.9e-19 97.1 106 50.0
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 8.9e-19 97.1 107 48.6
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 8.9e-19 97.1 111 51.4
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 1.2e-18 96.7 106 50.9
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 1.5e-18 96.3 108 52.8
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.6e-18 95.5 85 57.6
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 3.4e-18 95.1 107 48.6
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.8e-18 94.4 107 52.3
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 5.8e-18 94.4 61 70.5
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 7.5e-18 94.0 106 49.1
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 9.8e-18 93.6 54 79.6
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 2.9e-17 92.0 79 59.5
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 2.9e-17 92.0 109 45.9
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 6.4e-17 90.9 112 49.1
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 4.1e-16 88.2 66 63.6
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 4.1e-16 88.2 64 64.1
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 5.4e-16 87.8 110 47.3
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 7.1e-16 87.4 54 64.8
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 4.6e-15 84.7 63 63.5
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 7.8e-15 84.0 87 56.3
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.3e-14 83.2 52 65.4
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 3.9e-14 81.6 52 69.2
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.3e-13 78.6 90 44.4
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 2.8e-12 75.5 113 45.1
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 3.6e-12 75.1 50 64.0
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.3e-11 72.4 69 49.3
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 3.1e-11 72.0 36 86.1
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.3e-09 66.6 101 42.6
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 1.7e-09 66.2 32 84.4
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 4.9e-09 64.7 72 50.0
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 6.4e-09 64.3 72 48.6


User provided reference genes

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