Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0786G001 Amborella trichopoda HOM05D000396 ORTHO05D001816 5.1e-41 170.6 86 100.0
ATR0820G195 Amborella trichopoda HOM05D000396 ORTHO05D001816 7.4e-40 166.8 86 96.5
ATR0772G131 Amborella trichopoda HOM05D000396 ORTHO05D001816 2.7e-21 105.1 86 66.3
DCAR_029220 Daucus carota HOM05D000396 ORTHO05D001816 1.0e-12 76.6 87 51.7
MBI12_g36304_MAGBIO Magnolia biondii HOM05D000396 ORTHO05D001816 6.6e-12 73.9 82 52.4
DCAR_001810 Daucus carota HOM05D000396 ORTHO05D001816 8.6e-12 73.6 88 50.0
ECA234G2739 Erigeron canadensis HOM05D000396 ORTHO05D001816 3.3e-11 71.6 80 50.0
Lj9C317T2 Lonicera japonica HOM05D000396 ORTHO05D001816 7.2e-11 70.5 92 45.7
CSS0000714 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 1.2e-10 69.7 81 50.6
CSS0040629 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 2.1e-10 68.9 81 50.6
Nn5g28703 Nelumbo nucifera HOM05D000396 ORTHO05D001816 4.7e-10 67.8 90 47.8
Lsat_1_v5_gn_5_106560 Lactuca sativa HOM05D000396 ORTHO05D001816 6.1e-10 67.4 80 46.2
Ah.05g167780 Amaranthus hybridus HOM05D000396 ORTHO05D001816 8.0e-10 67.0 64 50.0
HanXRQChr10g0293251 Helianthus annuus HOM05D000396 ORTHO05D001816 1.4e-09 66.2 90 48.9
Aa31LG9G12350 Aethionema arabicum HOM05D000396 ORTHO05D001816 1.8e-09 65.9 83 49.4
Dinv24238 Davidia involucrata HOM05D000396 ORTHO05D001816 2.3e-09 65.5 84 48.8
Dinv41096 Davidia involucrata HOM05D000396 ORTHO05D001816 2.3e-09 65.5 82 46.3
Glyma.08G076400 Glycine max HOM05D000396 ORTHO05D001816 2.3e-09 65.5 59 57.6
BcaB04g17750 Brassica carinata HOM05D000396 ORTHO05D001816 3.0e-09 65.1 89 46.1
unitig_26.g9288 Utricularia gibba HOM05D000396 ORTHO05D001816 4.0e-09 64.7 75 49.3
Phvul.002G204900 Phaseolus vulgaris HOM05D000396 ORTHO05D001816 8.9e-09 63.5 42 69.0
CDE08G0925 Ceratophyllum demersum HOM05D000396 ORTHO05D001816 1.2e-08 63.2 86 51.2
EL10Ac1g01518 Beta vulgaris HOM05D000396 ORTHO05D001816 2.0e-08 62.4 45 60.0
FAN20G2508 Fragaria x ananassa HOM05D000396 ORTHO05D001816 2.0e-08 62.4 82 45.1
MELO3C008357.2 Cucumis melo HOM05D000396 ORTHO05D001816 2.6e-08 62.0 51 62.7
Migut.C01009 Erythranthe guttata HOM05D000396 ORTHO05D001816 2.6e-08 62.0 38 76.3
THA.LOC104798877 Tarenaya hassleriana HOM05D000396 ORTHO05D001816 2.6e-08 62.0 89 46.1
HPP92_026235 Vanilla planifolia HOM05D000396 ORTHO05D001816 2.6e-08 62.0 81 45.7
CANSAT25G1491 Cannabis sativa HOM05D000396 ORTHO05D001816 3.4e-08 61.6 88 46.6
Hma1.2p1_0217F.1_g091530 Hydrangea macrophylla HOM05D000396 ORTHO05D001816 3.4e-08 61.6 39 74.4
Potri.002G069800 Populus trichocarpa HOM05D000396 ORTHO05D001816 3.4e-08 61.6 69 52.2
SalBow7G0219 Salvia bowleyana HOM05D000396 ORTHO05D001816 3.4e-08 61.6 81 45.7
SalBow7G0602 Salvia bowleyana HOM05D000396 ORTHO05D001816 3.4e-08 61.6 81 45.7
TAR381G1207 Trochodendron aralioides HOM05D000396 ORTHO05D001816 3.4e-08 61.6 79 50.6
Aqoxy5G02130 Aquilegia oxysepala HOM05D000396 ORTHO05D001816 4.4e-08 61.2 77 49.4
Ca_00109_v3 Cicer arietinum L. HOM05D000396 ORTHO05D001816 4.4e-08 61.2 82 45.1
FvH4_2g14160 Fragaria vesca HOM05D000396 ORTHO05D001816 4.4e-08 61.2 82 43.9
FAN24G3281 Fragaria x ananassa HOM05D000396 ORTHO05D001816 4.4e-08 61.2 82 43.9
Glyma.08G181700 Glycine max HOM05D000396 ORTHO05D001816 4.4e-08 61.2 59 57.6
Sed0002939 Sechium edule HOM05D000396 ORTHO05D001816 4.4e-08 61.2 77 49.4
THA.LOC104806853 Tarenaya hassleriana HOM05D000396 ORTHO05D001816 4.4e-08 61.2 93 41.9
AUR62013549 Chenopodium quinoa HOM05D000396 ORTHO05D001816 5.7e-08 60.8 61 55.7
Ciclev10000775m.g Citrus clementina HOM05D000396 ORTHO05D001816 5.7e-08 60.8 91 42.9
CsaV3_1G019620 Cucumis sativus L. HOM05D000396 ORTHO05D001816 5.7e-08 60.8 51 60.8
CsaV3_6G005330 Cucumis sativus L. HOM05D000396 ORTHO05D001816 5.7e-08 60.8 51 60.8
QL02p024176 Quercus lobata HOM05D000396 ORTHO05D001816 5.7e-08 60.8 41 68.3
Sabra02G0054500 Salix brachista HOM05D000396 ORTHO05D001816 5.7e-08 60.8 67 53.7
TPR.G19722 Trifolium pratense HOM05D000396 ORTHO05D001816 5.7e-08 60.8 84 44.0
ClCG08G006920 Citrullus lanatus HOM05D000396 ORTHO05D001816 7.5e-08 60.5 68 51.5
Glyma.15G050600 Glycine max HOM05D000396 ORTHO05D001816 7.5e-08 60.5 56 57.1
Sc02g0004210 Simmondsia chinensis HOM05D000396 ORTHO05D001816 7.5e-08 60.5 71 45.1
arahy.Tifrunner.gnm1.ann1.ARB3KQ Arachis hypogaea HOM05D000396 ORTHO05D001816 9.8e-08 60.1 39 69.2
CSS0024937 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 9.8e-08 60.1 85 45.9
Cfa005574 Carpinus fangiana HOM05D000396 ORTHO05D001816 9.8e-08 60.1 80 46.2
CiPaw.15G017300 Carya illinoinensis HOM05D000396 ORTHO05D001816 9.8e-08 60.1 78 44.9
Thhalv10011430m.g Eutrema salsugineum HOM05D000396 ORTHO05D001816 9.8e-08 60.1 91 42.9
Nitab4.5_0004908g0060 Nicotiana tabacum HOM05D000396 ORTHO05D001816 9.8e-08 60.1 63 50.8
TWI32G0250 Tripterygium wilfordii HOM05D000396 ORTHO05D001816 9.8e-08 60.1 80 45.0
TWI34G1384 Tripterygium wilfordii HOM05D000396 ORTHO05D001816 9.8e-08 60.1 67 47.8
TAR628G0024 Trochodendron aralioides HOM05D000396 ORTHO05D001816 9.8e-08 60.1 81 48.1
BcaB07g33978 Brassica carinata HOM05D000396 ORTHO05D001816 1.3e-07 59.7 88 44.3
Lj6g0013354 Lotus japonicus HOM05D000396 ORTHO05D001816 1.3e-07 59.7 83 47.0
Manes.18G090400 Manihot esculenta HOM05D000396 ORTHO05D001816 1.3e-07 59.7 38 73.7
Medtr6g071995 Medicago truncatula HOM05D000396 ORTHO05D001816 1.3e-07 59.7 83 43.4
Nitab4.5_0000032g0410 Nicotiana tabacum HOM05D000396 ORTHO05D001816 1.3e-07 59.7 63 50.8
arahy.Tifrunner.gnm1.ann1.AI1DXZ Arachis hypogaea HOM05D000396 ORTHO05D001816 1.7e-07 59.3 39 69.2
arahy.Tifrunner.gnm1.ann1.DH627J Arachis hypogaea HOM05D000396 ORTHO05D001816 1.7e-07 59.3 39 69.2
arahy.Tifrunner.gnm1.ann1.K144IY Arachis hypogaea HOM05D000396 ORTHO05D001816 1.7e-07 59.3 39 69.2
arahy.Tifrunner.gnm1.ann1.K519JC Arachis hypogaea HOM05D000396 ORTHO05D001816 1.7e-07 59.3 39 69.2
arahy.Tifrunner.gnm1.ann1.Y1T38L Arachis hypogaea HOM05D000396 ORTHO05D001816 1.7e-07 59.3 39 69.2
Lj7C371G11 Lonicera japonica HOM05D000396 ORTHO05D001816 1.7e-07 59.3 67 49.3
Potri.005G190500 Populus trichocarpa HOM05D000396 ORTHO05D001816 1.7e-07 59.3 74 47.3
RcHm_v2.0_Chr6g0276311 Rosa chinensis HOM05D000396 ORTHO05D001816 1.7e-07 59.3 80 45.0
SHI09286 Sapria himalayana HOM05D000396 ORTHO05D001816 1.7e-07 59.3 38 73.7
SEGI_24105 Sequoiadendron giganteum HOM05D000396 ORTHO05D001816 1.7e-07 59.3 90 38.9
SGA_v2.0_scaffold611G53185 Striga asiatica HOM05D000396 ORTHO05D001816 1.7e-07 59.3 80 46.2
VMungo0251G0917 Vigna mungo HOM05D000396 ORTHO05D001816 1.7e-07 59.3 56 55.4
Eucgr.F04257 Eucalyptus grandis HOM05D000396 ORTHO05D001816 2.2e-07 58.9 42 61.9
Oeu046017.1 Olea europaea HOM05D000396 ORTHO05D000116 2.2e-07 58.9 47 61.7
PGR044G1439 Punica granatum HOM05D000396 ORTHO05D001816 2.2e-07 58.9 80 43.8
CARHR035550 Cardamine hirsuta HOM05D000396 ORTHO05D001816 2.8e-07 58.5 83 42.2
CDE06G0991 Ceratophyllum demersum HOM05D000396 ORTHO05D001816 2.8e-07 58.5 39 74.4
Medtr2g008120 Medicago truncatula HOM05D000396 ORTHO05D001816 2.8e-07 58.5 55 54.5
Oeu019811.1 Olea europaea HOM05D000396 ORTHO05D001816 2.8e-07 58.5 81 44.4
PGSC0003DMG400000785 Solanum tuberosum HOM05D000396 ORTHO05D001816 2.8e-07 58.5 53 56.6
BcaB07g31119 Brassica carinata HOM05D000396 ORTHO05D001816 3.7e-07 58.2 88 42.0
A08p07460 Brassica napus HOM05D000396 ORTHO05D001816 3.7e-07 58.2 89 41.6
BraA08t32760Z Brassica rapa HOM05D000396 ORTHO05D001816 3.7e-07 58.2 89 41.6
Haze_17741 Corylus avellana HOM05D000396 ORTHO05D001816 3.7e-07 58.2 86 45.3
Duzib116G0266 Durio zibethinus HOM05D000396 ORTHO05D001816 3.7e-07 58.2 86 43.0
Lalb_Chr20g0123211 Lupinus albus HOM05D000396 ORTHO05D001816 3.7e-07 58.2 69 49.3
PGR042G2484 Punica granatum HOM05D000396 ORTHO05D001816 3.7e-07 58.2 50 60.0
PGR122G0002 Punica granatum HOM05D000396 ORTHO05D001816 3.7e-07 58.2 50 60.0
CSS0015648 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 4.9e-07 57.8 85 44.7
Sabra05G0145600 Salix brachista HOM05D000396 ORTHO05D001816 4.9e-07 57.8 74 45.9
GSVIVG01034903001 Vitis vinifera HOM05D000396 ORTHO05D001816 4.9e-07 57.8 38 71.1
MSTRG.25315 Avicennia marina HOM05D000396 ORTHO05D001816 6.3e-07 57.4 49 59.2
BcaC07g37442 Brassica carinata HOM05D000396 ORTHO05D001816 6.3e-07 57.4 88 40.9
A09p19130 Brassica napus HOM05D000396 ORTHO05D001816 6.3e-07 57.4 88 40.9
C08p09160 Brassica napus HOM05D000396 ORTHO05D001816 6.3e-07 57.4 88 40.9
BolC5t32392H Brassica oleracea HOM05D000396 ORTHO05D001816 6.3e-07 57.4 85 42.4
BolC8t47765H Brassica oleracea HOM05D000396 ORTHO05D001816 6.3e-07 57.4 88 40.9
BraA09t37531Z Brassica rapa HOM05D000396 ORTHO05D001816 6.3e-07 57.4 88 40.9
AUR62026732 Chenopodium quinoa HOM05D000396 ORTHO05D001816 6.3e-07 57.4 61 50.8
Peaxi162Scf01292g00029 Petunia axillaris HOM05D000396 ORTHO05D001816 6.3e-07 57.4 39 71.8
PGSC0003DMG400029122 Solanum tuberosum HOM05D000396 ORTHO05D001816 6.3e-07 57.4 53 54.7
A05p21820 Brassica napus HOM05D000396 ORTHO05D001816 8.3e-07 57.0 85 41.2
C09p24130 Brassica napus HOM05D000396 ORTHO05D001816 8.3e-07 57.0 88 40.9
BraA05t21103Z Brassica rapa HOM05D000396 ORTHO05D001816 8.3e-07 57.0 85 41.2
Gohir.A05G242800 Gossypium hirsutum HOM05D000396 ORTHO05D001816 8.3e-07 57.0 55 54.5
Gohir.D05G244300 Gossypium hirsutum HOM05D000396 ORTHO05D001816 8.3e-07 57.0 55 54.5
Gorai.009G253400 Gossypium raimondii HOM05D000396 ORTHO05D001816 8.3e-07 57.0 55 54.5
Lsat_1_v5_gn_5_106640 Lactuca sativa HOM05D000396 ORTHO05D001816 8.3e-07 57.0 58 51.7
VMungo0540G1676 Vigna mungo HOM05D000396 ORTHO05D001816 8.3e-07 57.0 82 41.5
FAN15G0585 Fragaria x ananassa HOM05D000396 ORTHO05D001816 1.1e-06 56.6 82 41.5
Psat1g219160 Pisum sativum HOM05D000396 ORTHO05D001816 1.1e-06 56.6 45 57.8
Sopen04g027090 Solanum pennellii HOM05D000396 ORTHO05D001816 1.8e-06 55.8 51 54.9
Thecc.08G149200 Theobroma cacao HOM05D000396 ORTHO05D001816 1.8e-06 55.8 38 68.4
Zm00001eb243180 Zea mays HOM05D000396 ORTHO05D001816 1.8e-06 55.8 64 48.4
Actinidia01150 Actinidia chinensis HOM05D000396 ORTHO05D001816 2.4e-06 55.5 39 64.1
Sp1g32730 Schrenkiella parvula HOM05D000396 ORTHO05D001816 2.4e-06 55.5 88 39.8
AT1G43710 Arabidopsis thaliana HOM05D000396 ORTHO05D001816 3.1e-06 55.1 85 38.8
CSS0049130 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 3.1e-06 55.1 69 46.4
MD10G1023600 Malus domestica HOM05D000396 ORTHO05D001816 3.1e-06 55.1 81 38.3
Manes.18G090416 Manihot esculenta HOM05D000396 ORTHO05D001816 3.1e-06 55.1 38 65.8
Nn1g06118 Nelumbo nucifera HOM05D000396 ORTHO05D001816 3.1e-06 55.1 77 42.9
Solyc04g071140.3 Solanum lycopersicum HOM05D000396 ORTHO05D001816 3.1e-06 55.1 51 54.9
Actinidia29523 Actinidia chinensis HOM05D000396 ORTHO05D001816 4.1e-06 54.7 39 64.1
BcaC04g22043 Brassica carinata HOM05D000396 ORTHO05D001816 4.1e-06 54.7 88 43.2
BolC9t55331H Brassica oleracea HOM05D000396 ORTHO05D001816 4.1e-06 54.7 88 43.2
COL.COLO4_24673 Corchorus olitorius HOM05D000396 ORTHO05D001816 4.1e-06 54.7 38 65.8
Aa31LG6G9720 Aethionema arabicum HOM05D000396 ORTHO05D001816 5.4e-06 54.3 40 65.0
AL1G51830 Arabidopsis lyrata HOM05D000396 ORTHO05D001816 5.4e-06 54.3 82 37.8
MSTRG.1357 Avicennia marina HOM05D000396 ORTHO05D001816 5.4e-06 54.3 76 47.4
BcaB02g11372 Brassica carinata HOM05D000396 ORTHO05D001816 5.4e-06 54.3 83 41.0
BcaC05g27668 Brassica carinata HOM05D000396 ORTHO05D001816 5.4e-06 54.3 85 40.0
C05p36530 Brassica napus HOM05D000396 ORTHO05D001816 5.4e-06 54.3 85 40.0
SGA_v2.0_scaffold48G17975 Striga asiatica HOM05D000396 ORTHO05D001816 5.4e-06 54.3 38 68.4
arahy.Tifrunner.gnm1.ann1.F4NS5X Arachis hypogaea HOM05D000396 ORTHO05D001816 7.0e-06 53.9 31 74.2
Haze_10790 Corylus avellana HOM05D000396 ORTHO05D001816 7.0e-06 53.9 80 41.2


User provided reference genes

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