Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.2e-306 1055.8 602 100.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.0e-71 273.9 578 38.6
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 5.2e-71 273.1 336 51.5
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.1e-70 271.9 319 52.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.2e-69 267.7 294 53.4
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.4e-68 265.0 565 36.8
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.1e-68 263.5 284 53.5
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.1e-68 263.5 284 53.5
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.6e-67 261.5 224 63.4
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.0e-67 261.2 328 51.2
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.7e-66 258.1 296 54.1
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 3.2e-65 253.8 191 68.1
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 5.5e-65 253.1 277 50.5
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.7e-64 250.8 552 37.1
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.0e-63 248.8 352 44.0
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.0e-63 248.8 274 54.4
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 3.0e-63 247.3 277 48.7
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.2e-62 245.4 256 52.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.0e-62 244.6 592 35.3
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.7e-59 234.2 307 47.2
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 5.9e-59 233.0 291 50.5
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 5.9e-59 233.0 221 55.2
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 8.5e-58 229.2 281 49.8
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.1e-57 228.8 233 54.1
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.5e-57 227.6 229 57.2
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 2.5e-57 227.6 231 53.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 9.4e-57 225.7 256 49.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.2e-56 225.3 223 55.6
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.2e-56 225.3 211 58.8
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.7e-56 224.2 228 55.3
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 2.7e-56 224.2 293 47.4
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 3.6e-56 223.8 249 51.0
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.0e-55 222.2 234 54.3
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.8e-55 221.5 288 49.0
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 3.0e-55 220.7 224 56.2
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 4.0e-55 220.3 224 56.2
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.0e-54 218.0 294 47.3
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 4.4e-54 216.9 252 53.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 9.8e-54 215.7 328 44.5
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.3e-53 215.3 225 54.7
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.7e-53 214.9 255 50.2
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 2.2e-53 214.5 183 59.6
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 3.7e-53 213.8 279 45.9
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 6.3e-53 213.0 218 54.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 8.3e-53 212.6 234 53.4
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 8.3e-53 212.6 252 51.2
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.4e-52 211.8 258 45.3
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.8e-52 211.5 199 56.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.2e-51 208.8 200 57.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.2e-51 208.8 200 57.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.2e-51 208.8 265 48.7
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.0e-51 208.0 318 44.7
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.7e-51 207.6 166 63.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.5e-51 207.2 271 48.3
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 7.7e-51 206.1 260 47.3
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 5.5e-49 199.9 271 48.7
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 7.2e-49 199.5 324 41.4
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.2e-48 198.7 250 48.4
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 8.0e-48 196.1 227 50.7
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.0e-48 196.1 289 46.0
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.3e-47 194.5 271 44.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 5.2e-47 193.4 256 46.9
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.8e-46 189.1 239 46.0
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.3e-45 188.7 199 50.8
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-45 188.7 199 50.8
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.2e-45 188.0 298 40.9
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 3.7e-45 187.2 259 44.4
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.3e-45 186.4 199 50.3
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.8e-44 184.9 230 46.1
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.4e-44 184.5 215 49.3
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.6e-43 181.8 245 46.5
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.5e-43 180.6 230 46.5
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 7.8e-43 179.5 283 42.0
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.3e-42 177.9 273 44.7
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.9e-42 177.6 280 43.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 5.0e-42 176.8 248 46.0
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.9e-41 174.9 277 44.4
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.3e-41 173.7 280 43.6
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.1e-40 171.4 276 42.8
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.1e-40 171.4 301 40.2
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 8.0e-40 169.5 269 45.0
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 2.6e-38 164.5 202 47.0
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.7e-37 161.8 248 45.6
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.9e-37 160.2 280 40.4
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 4.1e-36 157.1 279 40.5
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 4.1e-36 157.1 279 40.5
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 4.1e-36 157.1 279 40.5
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 5.4e-36 156.8 279 41.2
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.6e-35 155.2 141 60.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.6e-35 155.2 252 42.9
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.7e-35 154.5 279 40.1
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.7e-35 154.5 279 40.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 3.5e-35 154.1 176 51.7
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 1.1e-33 149.1 281 39.5
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.1e-33 149.1 196 43.9
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 5.6e-33 146.7 558 29.0
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 5.6e-33 146.7 114 64.0
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.6e-32 145.2 284 38.0
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 4.7e-32 143.7 245 40.4
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 6.2e-32 143.3 227 44.5
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.4e-31 142.1 271 38.0
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-30 139.0 188 45.7
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.3e-29 135.6 270 38.1
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.1e-28 132.5 179 45.8
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.4e-28 130.2 156 52.6
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 7.0e-28 129.8 259 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 7.3e-25 119.8 182 41.2
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 2.1e-24 118.2 255 33.3
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.8e-24 117.9 140 55.0
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.6e-24 117.5 108 55.6
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.8e-23 115.2 254 33.1
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 3.1e-23 114.4 227 37.4
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.9e-17 95.1 108 50.0
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.5e-17 94.7 115 47.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 4.3e-17 94.0 175 37.7
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 9.5e-17 92.8 160 40.6
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 4.0e-15 87.4 114 44.7
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 5.2e-15 87.0 190 37.9
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.5e-14 85.5 107 45.8
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.5e-14 85.5 80 53.8
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 2.6e-14 84.7 114 44.7
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 4.9e-13 80.5 178 36.5
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.4e-12 79.0 64 65.6
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.1e-12 77.4 59 57.6
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.7e-11 74.7 163 38.0
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-11 73.9 80 55.0
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 6.0e-11 73.6 187 33.2
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.8e-11 73.2 178 33.1
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 1.7e-10 72.0 200 30.5
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 5.1e-10 70.5 192 29.7
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.7e-10 69.7 223 29.6
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 4.3e-09 67.4 59 52.5
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 7.3e-09 66.6 68 45.6
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 7.3e-09 66.6 68 45.6
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-08 65.5 235 28.5
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 2.1e-08 65.1 74 48.6
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.6e-08 64.3 197 27.4
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 4.0e-07 60.8 42 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 9.0e-07 59.7 193 29.5
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 9.0e-07 59.7 160 27.5
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 2.0e-06 58.5 60 50.0
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 2.0e-06 58.5 124 33.1
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 2.6e-06 58.2 155 31.0
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 3.4e-06 57.8 75 41.3
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 5.8e-06 57.0 192 26.6
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 7.6e-06 56.6 213 25.4
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 9.9e-06 56.2 187 28.3
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 9.9e-06 56.2 187 28.3
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 9.9e-06 56.2 187 28.3
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 9.9e-06 56.2 185 25.4


User provided reference genes

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