Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.8e-238 828.2 412 100.0
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 4.8e-161 571.6 386 73.6
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.0e-158 563.9 436 67.7
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 5.0e-158 561.6 389 73.0
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.4e-157 560.1 391 72.4
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 5.1e-155 551.6 385 71.9
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 8.8e-155 550.8 387 72.4
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 3.1e-152 542.3 388 69.8
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.3e-147 526.2 387 69.0
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.3e-147 526.2 387 69.0
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 8.8e-147 524.2 387 68.7
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.1e-146 523.9 396 67.7
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.5e-146 523.5 395 68.1
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.6e-146 522.7 386 68.9
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 4.4e-146 521.9 393 67.4
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 5.7e-146 521.5 388 68.0
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.4e-146 521.2 387 68.5
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.8e-145 519.2 388 67.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.4e-144 516.2 387 67.7
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 5.3e-144 515.0 386 67.1
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 7.0e-144 514.6 385 68.3
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 7.0e-144 514.6 387 67.4
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.1e-144 514.2 397 66.0
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 9.1e-144 514.2 386 67.9
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 2.0e-143 513.1 392 65.6
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.3e-142 510.4 385 67.5
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.7e-142 510.0 386 66.3
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 6.5e-142 508.1 386 66.1
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 6.5e-142 508.1 386 65.8
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 6.5e-142 508.1 385 67.5
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 8.5e-142 507.7 388 67.5
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.5e-141 506.9 387 67.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.5e-141 506.9 387 66.9
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.5e-141 506.1 401 65.1
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 4.2e-141 505.4 388 66.5
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 5.5e-141 505.0 387 66.1
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.4e-141 504.2 387 66.4
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.6e-140 503.4 388 65.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 2.1e-140 503.1 413 64.9
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.1e-140 503.1 396 65.4
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 3.6e-140 502.3 385 67.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.7e-140 501.9 387 66.1
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 6.1e-140 501.5 402 66.2
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.1e-140 501.5 388 67.3
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.0e-139 500.7 398 64.3
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.4e-139 500.4 386 65.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.0e-139 498.8 391 66.5
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 5.2e-139 498.4 386 65.8
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-138 496.1 388 66.5
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 5.7e-138 495.0 385 64.9
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 2.8e-137 492.7 384 66.4
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 4.8e-137 491.9 395 64.1
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 4.8e-137 491.9 388 64.9
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-136 490.3 425 60.5
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.8e-136 490.0 387 64.6
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 3.1e-136 489.2 386 64.2
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 4.1e-136 488.8 389 63.5
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.1e-136 488.8 402 64.4
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 7.0e-136 488.0 387 64.1
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 9.1e-136 487.6 390 66.9
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.6e-135 486.9 384 65.1
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.3e-134 483.8 395 63.5
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 3.8e-134 482.3 394 63.2
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.5e-133 480.3 384 62.5
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.5e-133 480.3 413 60.5
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 4.2e-133 478.8 386 64.2
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 7.2e-133 478.0 385 62.9
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 7.2e-133 478.0 401 62.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.2e-132 477.2 385 62.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 6.1e-132 474.9 386 62.7
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 8.0e-132 474.6 394 61.9
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.8e-131 473.4 385 63.9
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.3e-131 473.0 385 62.3
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 3.0e-131 472.6 385 61.6
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 4.0e-131 472.2 385 62.1
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 5.2e-131 471.9 385 62.1
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 6.8e-131 471.5 400 62.8
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 5.7e-130 468.4 385 61.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 7.5e-130 468.0 383 61.1
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.3e-129 467.2 392 60.5
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 3.7e-129 465.7 392 60.2
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.6e-127 460.3 389 61.2
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.9e-126 456.1 383 61.6
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.9e-125 453.4 383 61.4
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.2e-125 452.2 354 66.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 8.0e-124 448.0 387 61.0
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-123 447.2 387 59.9
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 2.2e-121 439.9 379 59.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.2e-121 439.9 403 58.8
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 4.9e-121 438.7 388 59.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 4.9e-121 438.7 307 72.6
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.1e-120 437.6 385 58.2
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.0e-119 433.3 390 58.5
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.8e-116 422.9 400 56.5
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.0e-115 421.0 380 59.2
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 4.0e-115 419.1 386 58.0
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 5.7e-114 415.2 383 57.2
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 7.0e-112 408.3 386 55.2
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.0e-111 406.8 420 52.1
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.3e-110 404.1 383 57.4
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 3.0e-110 402.9 391 56.0
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.4e-104 384.0 410 52.4
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 3.2e-104 382.9 265 70.9
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 2.7e-103 379.8 393 54.2
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.8e-103 378.3 395 52.9
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 8.6e-102 374.8 385 51.9
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 8.1e-100 368.2 400 53.5
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.7e-97 359.4 432 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 7.3e-93 345.1 397 48.9
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 3.6e-92 342.8 396 49.2
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.0e-86 324.7 425 45.6
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 3.9e-86 322.8 382 47.9
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 9.6e-85 318.2 297 55.6
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 9.6e-85 318.2 303 54.1
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 5.8e-82 308.9 418 44.3
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.7e-71 273.5 275 52.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 9.9e-66 255.0 234 53.8
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.4e-56 224.6 342 45.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 6.7e-54 215.7 356 43.3
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.3e-52 209.1 250 45.6
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 3.2e-48 196.8 151 60.3
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 5.7e-45 186.0 141 69.5
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.1e-31 141.0 109 67.0
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.1e-31 139.4 109 66.1
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.0e-30 138.7 109 67.0
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.4e-29 132.5 109 64.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 2.0e-26 124.4 103 64.1
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.1e-24 118.6 95 61.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.2e-24 117.1 128 46.9
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 2.1e-23 114.4 126 52.4
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.3e-22 110.9 114 61.4
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 4.8e-20 103.2 111 48.6
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.2e-17 94.4 84 66.7
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.2e-17 94.4 152 38.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.9e-16 91.3 82 59.8
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.7e-15 86.7 60 70.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 9.1e-11 72.4 274 27.4
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.0e-10 71.2 50 64.0
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.7e-07 60.1 44 65.9
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.1e-07 59.7 62 45.2
PRCOL_00001539 Prasinoderma coloniale HOM05D000059 ORTHO05D333127 2.3e-06 57.8 238 30.3


User provided reference genes

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