Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 0.0e+00 1164.8 582 100.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.0e-274 948.7 596 81.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.5e-274 947.6 585 81.2
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 8.6e-273 943.3 592 80.9
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.5e-272 942.6 576 82.3
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 2.5e-272 941.8 586 81.6
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.0e-270 936.4 535 86.4
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.3e-270 935.3 541 85.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 8.9e-270 933.3 538 85.1
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.5e-269 932.6 570 82.6
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.0e-269 932.2 590 80.3
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.6e-269 931.8 576 81.6
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 2.6e-269 931.8 577 81.6
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.7e-269 930.6 593 79.6
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 7.5e-269 930.2 593 80.4
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.3e-268 929.5 566 81.6
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.2e-268 928.7 566 81.3
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.4e-268 927.2 587 80.4
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.1e-267 926.4 566 81.8
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.4e-267 926.0 572 82.0
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.8e-267 925.6 586 80.4
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.8e-267 925.6 571 81.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.4e-267 924.1 543 84.9
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.2e-267 923.3 543 84.9
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.2e-267 923.3 587 79.9
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.6e-266 922.5 589 80.0
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.6e-266 922.5 571 80.9
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.6e-266 922.5 590 79.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.6e-266 922.5 576 80.7
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.0e-266 922.2 572 81.5
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.7e-266 921.8 591 79.4
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.5e-266 921.4 584 79.3
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.0e-265 919.8 550 83.1
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 3.0e-265 918.3 551 82.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 3.0e-265 918.3 541 83.9
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 3.9e-265 917.9 588 79.4
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.6e-265 917.1 588 79.3
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 8.6e-265 916.8 539 83.9
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.5e-264 916.0 579 80.5
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.3e-264 914.8 581 79.5
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 5.6e-264 914.1 577 80.1
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 5.6e-264 914.1 541 84.1
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 9.5e-264 913.3 548 81.8
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 9.5e-264 913.3 587 78.4
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 1.2e-263 912.9 578 79.4
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.2e-263 912.9 579 79.6
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-263 912.1 576 80.6
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-263 912.1 604 77.5
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.8e-263 911.8 541 83.2
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.8e-263 911.8 543 82.7
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.8e-262 909.1 597 77.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.1e-262 908.3 554 81.8
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 8.9e-262 906.7 568 80.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 1.2e-261 906.4 581 78.3
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.0e-261 905.6 591 77.2
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 2.6e-261 905.2 602 76.9
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.4e-261 904.4 591 77.3
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 5.8e-261 904.0 591 77.2
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.7e-260 902.5 581 77.5
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.7e-260 902.5 580 77.2
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.7e-260 902.5 579 77.0
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.7e-260 902.5 532 83.8
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.7e-260 901.4 549 80.7
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.1e-259 899.8 580 77.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-259 899.4 585 77.8
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 3.2e-259 898.3 589 76.9
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.1e-259 897.9 579 77.4
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.2e-258 896.3 594 76.6
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.2e-258 896.3 583 77.2
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-258 896.3 574 79.3
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 2.0e-258 895.6 569 78.9
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.5e-258 894.8 580 77.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 6.0e-258 894.0 581 77.1
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.0e-257 893.3 577 77.1
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.1e-256 889.8 581 76.6
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.5e-256 889.4 584 76.5
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.9e-256 889.0 591 76.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.1e-255 885.6 586 76.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.5e-253 879.4 539 81.1
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.3e-252 876.3 597 73.9
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 8.3e-252 873.6 590 74.6
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-251 873.2 587 74.6
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 2.4e-251 872.1 593 75.5
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 7.1e-251 870.5 554 78.2
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 4.6e-250 867.8 626 72.5
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.6e-250 867.8 541 77.1
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.3e-249 865.5 566 77.6
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 6.6e-249 864.0 613 72.8
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 9.5e-248 860.1 535 77.6
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 4.4e-245 851.3 544 76.8
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.1e-243 844.7 570 75.8
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 3.5e-242 841.6 571 76.4
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.0e-241 840.1 554 77.6
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.3e-241 839.0 577 74.7
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.9e-241 838.2 570 75.3
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.1e-240 836.6 480 85.4
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.4e-235 817.8 539 77.2
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 5.4e-235 817.8 646 68.0
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.1e-234 815.8 577 72.4
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.3e-233 813.1 512 80.5
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.7e-233 812.8 545 72.7
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 3.0e-233 812.0 549 72.1
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.8e-231 805.4 569 74.7
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.7e-226 788.9 577 69.3
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.7e-225 786.2 550 70.5
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.5e-224 783.1 532 72.2
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 9.0e-222 773.9 562 70.5
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 3.2e-219 765.4 464 80.4
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.4e-214 749.2 426 85.4
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.2e-204 716.1 519 71.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-203 713.8 564 66.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 6.3e-191 671.4 540 61.9
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 7.2e-187 657.9 524 67.2
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.0e-184 649.8 406 80.0
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 3.2e-163 579.3 510 58.6
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.8e-161 573.5 342 85.4
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-160 570.9 407 74.0
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 4.5e-157 558.9 544 53.3
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.8e-157 558.1 358 78.8
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 2.3e-156 556.6 555 56.8
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 2.1e-130 470.3 573 47.1
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 4.4e-128 462.6 257 89.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.5e-93 346.7 231 73.2
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 3.8e-87 326.6 188 79.8
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 5.2e-68 263.1 209 63.2
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 6.3e-66 256.1 408 42.4
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 8.5e-55 219.2 199 56.3
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 9.5e-46 189.1 116 81.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-45 188.7 153 67.3
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.8e-41 174.9 149 63.8
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.0e-36 157.1 94 73.4
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.6e-35 154.5 102 74.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 4.3e-30 137.1 314 32.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 2.3e-28 131.3 312 34.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.9e-25 121.7 76 82.9
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.7e-18 98.6 88 60.2
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 8.3e-18 96.3 58 81.0
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-13 82.4 112 46.4
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 8.1e-13 79.7 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 5.2e-12 77.0 107 45.8
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 5.2e-12 77.0 42 76.2
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 6.8e-12 76.6 45 73.3
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 7.1e-09 66.6 52 73.1
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 9.2e-09 66.2 48 70.8
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 9.2e-09 66.2 39 82.1
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 2.7e-08 64.7 36 75.0
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 1.7e-07 62.0 87 46.0
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 1.5e-06 58.9 112 38.4
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 4.3e-06 57.4 44 61.4
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 7.3e-06 56.6 55 56.4


User provided reference genes

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