Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 3.7e-203 711.4 392 100.0
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.9e-146 523.1 395 74.7
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 4.3e-143 511.9 395 72.4
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 2.1e-142 509.6 395 73.2
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.8e-142 509.2 392 74.0
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.2e-140 503.8 395 72.4
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.3e-139 500.4 395 71.4
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.9e-139 499.2 395 71.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 5.4e-138 495.0 395 71.1
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 5.4e-138 495.0 395 69.6
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 7.1e-138 494.6 395 69.4
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.2e-137 493.8 395 69.9
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 1.2e-137 493.8 395 69.9
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 3.5e-137 492.3 395 71.1
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 3.5e-137 492.3 395 72.4
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 6.0e-137 491.5 395 71.9
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 7.8e-137 491.1 395 69.6
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 7.8e-137 491.1 395 70.1
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.0e-136 490.7 395 70.1
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-136 490.3 395 70.1
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-136 490.3 395 70.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.7e-136 490.0 395 69.1
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.9e-136 488.8 395 71.1
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 5.1e-136 488.4 395 70.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.1e-135 487.3 395 71.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-135 487.3 395 69.6
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-135 487.3 395 69.6
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.1e-135 487.3 395 69.9
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.3e-135 485.7 395 69.9
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.3e-135 485.7 395 68.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.3e-134 483.8 396 69.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.6e-134 483.4 393 67.9
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.6e-134 482.3 397 69.5
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 4.8e-134 481.9 404 69.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 6.2e-134 481.5 395 67.8
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 6.2e-134 481.5 411 67.9
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.1e-133 480.7 395 69.6
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.8e-133 479.9 395 65.8
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.0e-133 478.8 395 67.3
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 6.9e-133 478.0 397 69.0
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 6.9e-133 478.0 395 69.9
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 9.0e-133 477.6 394 68.3
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.5e-132 476.9 395 67.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.5e-132 476.9 396 63.9
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 2.0e-132 476.5 395 70.1
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.0e-132 476.5 395 68.6
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 2.6e-132 476.1 396 64.4
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.6e-132 476.1 395 67.3
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.5e-132 475.3 396 66.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.5e-132 475.3 396 64.4
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.8e-132 474.9 395 69.6
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.3e-131 473.8 396 64.1
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.3e-131 473.8 395 68.4
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.7e-131 473.4 395 64.8
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.7e-131 473.4 396 64.1
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.2e-131 473.0 395 68.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.9e-131 472.6 397 63.7
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.9e-131 471.9 395 64.3
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.2e-130 469.2 395 61.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.4e-130 468.4 398 67.8
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 9.3e-130 467.6 393 69.0
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.6e-129 466.8 418 66.3
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.1e-129 466.5 439 64.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.7e-129 466.1 392 63.3
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-129 465.7 392 63.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 6.0e-129 464.9 398 68.1
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 7.9e-129 464.5 395 68.4
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.0e-128 464.2 395 66.6
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.0e-128 464.2 393 67.7
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-128 463.8 398 67.8
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 3.0e-128 462.6 392 63.0
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 3.0e-128 462.6 392 63.0
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 6.7e-128 461.5 395 65.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 8.7e-128 461.1 392 60.2
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 3.3e-127 459.1 394 67.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-126 457.2 397 62.0
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.6e-126 455.7 394 67.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 6.2e-126 454.9 379 67.8
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.5e-124 450.3 392 66.6
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 4.9e-123 445.3 408 64.2
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.4e-122 443.7 399 64.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 3.2e-122 442.6 392 66.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.2e-121 440.7 371 69.5
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.7e-121 439.5 371 69.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 8.7e-120 434.5 392 64.5
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.1e-119 434.1 401 65.1
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-119 433.3 379 61.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.7e-118 429.1 395 65.3
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.4e-117 427.2 393 64.6
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 4.9e-115 418.7 387 64.3
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.5e-114 416.4 359 63.2
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.9e-112 409.1 403 57.6
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 8.7e-112 407.9 392 56.9
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 9.6e-111 404.4 427 59.3
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.3e-102 377.5 395 60.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.1e-101 374.4 392 53.1
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 5.3e-101 372.1 371 62.3
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.0e-100 370.2 395 50.9
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.6e-95 353.2 394 51.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 5.7e-95 352.1 379 53.8
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 4.7e-89 332.4 285 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.3e-88 330.1 399 46.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.7e-86 323.9 290 57.9
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 8.0e-81 305.1 395 47.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.1e-77 294.7 245 61.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.1e-77 294.7 298 54.7
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.6e-65 254.2 329 54.4
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 7.5e-63 245.4 193 64.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.6e-57 227.6 384 47.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 4.7e-57 226.1 300 45.7
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-54 218.0 543 31.3
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.8e-48 197.6 183 54.1
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 4.0e-48 196.4 183 54.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 4.4e-47 193.0 293 43.0
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 6.4e-46 189.1 421 33.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.4e-45 186.0 153 69.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 3.0e-43 180.3 122 75.4
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.5e-42 177.9 407 33.4
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.0e-40 169.9 165 53.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 5.8e-39 166.0 122 70.5
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.7e-38 164.5 390 30.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 9.5e-34 148.7 163 46.6
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.9e-32 142.1 148 50.0
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.8e-31 139.4 89 76.4
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.5e-28 130.2 215 39.5
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 7.8e-28 129.0 116 55.2
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.3e-27 128.3 71 77.5
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 6.6e-27 125.9 125 60.8
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 7.3e-26 122.5 88 68.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 9.0e-24 115.5 71 77.5
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 9.9e-23 112.1 88 67.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 8.4e-22 109.0 135 43.7
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.4e-21 107.5 178 51.1
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.2e-20 105.1 100 53.0
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.1e-20 104.4 148 39.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 6.9e-16 89.4 50 72.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.8e-15 86.3 48 72.9
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 6.0e-12 76.3 100 40.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 2.3e-11 74.3 80 52.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 9.6e-10 68.9 51 64.7
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 8.1e-09 65.9 46 73.9
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.8e-08 64.7 44 70.5
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.1e-08 63.9 35 82.9
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.5e-07 61.6 47 59.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.5e-07 60.1 38 76.3


User provided reference genes

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