Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 6.8e-136 487.3 235 100.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.3e-99 366.7 232 72.4
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 8.7e-99 364.0 219 75.8
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 4.3e-98 361.7 221 75.6
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 4.3e-98 361.7 227 73.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 9.6e-98 360.5 218 76.1
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.4e-96 356.7 213 75.6
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 9.9e-95 350.5 218 71.6
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.3e-94 350.1 220 74.5
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 2.9e-94 349.0 227 70.0
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.4e-94 347.8 215 73.5
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 6.4e-94 347.8 215 72.6
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 8.4e-94 347.4 215 73.0
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.1e-93 347.1 231 68.4
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.1e-93 347.1 217 71.4
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.4e-93 346.7 218 72.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.9e-93 346.3 216 73.1
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.9e-93 346.3 217 71.4
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 2.4e-93 345.9 231 70.1
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 2.4e-93 345.9 217 71.4
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 3.2e-93 345.5 215 72.6
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 3.2e-93 345.5 225 68.9
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 4.2e-93 345.1 227 68.7
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 5.4e-93 344.7 218 71.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.2e-92 343.6 218 70.2
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 3.5e-92 342.0 222 68.9
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.6e-92 341.7 216 71.3
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 7.9e-92 340.9 218 70.6
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 7.9e-92 340.9 215 70.7
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 1.0e-91 340.5 218 72.0
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.3e-91 340.1 228 66.7
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.7e-91 339.7 218 70.2
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 3.0e-91 339.0 215 71.2
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 5.1e-91 338.2 223 70.0
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 5.1e-91 338.2 221 69.2
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 5.1e-91 338.2 219 68.5
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 6.6e-91 337.8 217 70.0
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 6.6e-91 337.8 224 68.3
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 8.7e-91 337.4 235 65.1
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.5e-90 336.7 215 69.8
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.9e-90 336.3 228 68.9
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.9e-90 336.3 218 69.7
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 2.5e-90 335.9 224 68.3
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 3.3e-90 335.5 217 69.1
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 4.3e-90 335.1 226 66.8
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.4e-90 334.3 215 69.8
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 9.6e-90 334.0 213 71.4
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 9.6e-90 334.0 232 65.9
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 9.6e-90 334.0 217 70.0
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 9.6e-90 334.0 215 70.2
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 9.6e-90 334.0 230 67.0
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.8e-89 332.4 228 65.4
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.8e-89 332.4 217 68.7
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.6e-89 332.0 219 68.5
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.6e-89 332.0 220 66.8
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 3.6e-89 332.0 220 69.5
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 4.8e-89 331.6 255 60.8
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.8e-89 331.6 240 65.8
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 4.8e-89 331.6 226 66.8
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 6.2e-89 331.3 227 66.1
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 8.1e-89 330.9 230 65.2
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.1e-88 330.5 218 68.3
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.8e-88 329.7 232 65.5
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.4e-88 329.3 232 65.1
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 4.0e-88 328.6 228 64.9
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 4.0e-88 328.6 216 68.5
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 9.0e-88 327.4 218 67.9
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 9.0e-88 327.4 226 65.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.5e-87 326.6 220 68.2
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.0e-87 326.2 245 61.2
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.6e-87 325.9 244 61.9
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 3.4e-87 325.5 219 66.7
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 3.4e-87 325.5 220 66.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.5e-87 325.1 222 67.1
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-86 323.6 218 66.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.3e-86 323.6 218 66.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.3e-86 323.6 218 66.1
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.9e-86 321.6 215 67.4
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.1e-85 320.5 219 66.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.1e-85 320.5 218 65.6
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.9e-85 319.7 218 68.3
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 4.2e-85 318.5 232 65.9
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 7.9e-84 314.3 215 64.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 2.9e-78 295.8 227 61.7
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 8.4e-78 294.3 213 66.2
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 3.2e-77 292.4 229 57.2
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 9.3e-77 290.8 175 74.9
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.1e-76 289.7 178 73.0
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 6.0e-76 288.1 174 74.1
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 6.0e-76 288.1 187 67.9
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.0e-75 285.8 174 73.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 8.7e-75 284.3 186 69.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.3e-74 282.3 173 73.4
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 7.4e-74 281.2 186 67.7
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 1.4e-72 276.9 174 72.4
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 3.1e-72 275.8 188 67.0
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 4.1e-72 275.4 221 62.0
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 5.0e-70 268.5 170 71.2
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 6.5e-70 268.1 217 59.4
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.9e-69 266.5 184 67.4
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 3.1e-56 222.6 215 48.4
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 5.3e-56 221.9 215 47.4
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 9.1e-56 221.1 164 63.4
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.6e-50 203.0 222 45.0
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 9.1e-48 194.5 136 66.2
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.3e-46 190.7 127 67.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.7e-46 190.3 127 67.7
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.6e-44 183.7 107 77.6
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.6e-44 182.6 222 45.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 4.0e-43 179.1 148 58.1
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.5e-42 174.9 218 42.2
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.1e-40 167.9 108 70.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.0e-35 154.5 126 58.7
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 4.0e-35 152.5 97 69.1
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.0e-34 150.2 107 67.3
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.8e-33 146.4 109 61.5
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 7.2e-29 131.7 106 59.4
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 6.3e-25 118.6 135 47.4
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 6.3e-25 118.6 135 47.4
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.8e-22 109.4 79 64.6
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 8.0e-20 101.7 78 62.8
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 4.0e-19 99.4 156 38.5
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.4e-16 89.0 56 71.4
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.3e-13 79.3 50 70.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.6e-12 77.4 119 39.5
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 6.8e-11 72.0 99 43.4
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 2.0e-10 70.5 121 36.4
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 4.4e-10 69.3 105 39.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.7e-09 67.4 131 33.6
SalBow1G1243 Salvia bowleyana HOM05D000450 ORTHO05D000327 9.2e-08 61.6 221 27.6
VMungo1383G1640 Vigna mungo HOM05D000450 ORTHO05D000327 1.2e-07 61.2 185 30.3
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 2.0e-07 60.5 181 28.7
Nn2g13124 Nelumbo nucifera HOM05D000450 ORTHO05D000327 1.0e-06 58.2 177 29.4
Gohir.A04G060900 Gossypium hirsutum HOM05D000450 ORTHO05D000327 1.3e-06 57.8 181 29.8
Os10g0479500 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 1.3e-06 57.8 177 27.7
Peaxi162Scf00211g01733 Petunia axillaris HOM05D000450 ORTHO05D000327 1.3e-06 57.8 175 28.6
CsaV3_3G037780 Cucumis sativus L. HOM05D000450 ORTHO05D000327 1.7e-06 57.4 194 28.9
FvH4_3g04250 Fragaria vesca HOM05D000450 ORTHO05D000327 3.0e-06 56.6 212 26.9
FAN11G1132 Fragaria x ananassa HOM05D000450 ORTHO05D000327 3.0e-06 56.6 212 26.9
Os03g0109300 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 3.0e-06 56.6 175 28.6
Hund19870 Selenicereus undatus HOM05D000450 ORTHO05D000327 3.0e-06 56.6 175 27.4
TPR.G31862 Trifolium pratense HOM05D000450 ORTHO05D000327 3.0e-06 56.6 181 29.8
A05p08680 Brassica napus HOM05D000450 ORTHO05D000327 3.9e-06 56.2 180 29.4
CiPaw.10G015800 Carya illinoinensis HOM05D000450 ORTHO05D000327 5.0e-06 55.8 181 29.8
Duzib093G1160 Durio zibethinus HOM05D000450 ORTHO05D000327 5.0e-06 55.8 181 29.8
Oeu058144.1 Olea europaea HOM05D000450 ORTHO05D000327 5.0e-06 55.8 181 29.8
PSO541G0438 Papaver somniferum HOM05D000450 ORTHO05D000327 5.0e-06 55.8 175 27.4
PSO675G7002 Papaver somniferum HOM05D000450 ORTHO05D000327 5.0e-06 55.8 176 28.4
Prupe.7G097700 Prunus persica HOM05D000450 ORTHO05D000327 5.0e-06 55.8 181 30.4
Rhsim07G0246400 Rhododendron simsii HOM05D000450 ORTHO05D000327 5.0e-06 55.8 181 28.7
TAR625G0070 Trochodendron aralioides HOM05D000450 ORTHO05D000327 5.0e-06 55.8 205 24.9
ATR0048G032 Amborella trichopoda HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 27.6
Glyma.11G145100 Glycine max HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 28.7
Gohir.D04G095000 Gossypium hirsutum HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 28.7
HanXRQChr11g0350091 Helianthus annuus HOM05D000450 ORTHO05D000327 6.6e-06 55.5 184 27.2
Medtr1g057020 Medicago truncatula HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 29.8
Phvul.007G269400 Phaseolus vulgaris HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 30.4
Psat6g084480 Pisum sativum HOM05D000450 ORTHO05D000327 6.6e-06 55.5 181 29.8
QL07p037401 Quercus lobata HOM05D000450 ORTHO05D000327 6.6e-06 55.5 188 30.3
TAR369G0523 Trochodendron aralioides HOM05D000450 ORTHO05D000327 6.6e-06 55.5 182 29.1
vmacro04343 Vaccinium macrocarpon HOM05D000450 ORTHO05D000327 6.6e-06 55.5 174 28.2
arahy.Tifrunner.gnm1.ann1.27R0NG Arachis hypogaea HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 29.3
arahy.Tifrunner.gnm1.ann1.2LA6L6 Arachis hypogaea HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 29.3
BcaB02g09299 Brassica carinata HOM05D000450 ORTHO05D000327 8.6e-06 55.1 180 28.9
BcaC02g11842 Brassica carinata HOM05D000450 ORTHO05D000327 8.6e-06 55.1 180 28.9
C04p10780 Brassica napus HOM05D000450 ORTHO05D000327 8.6e-06 55.1 180 28.9
CANSAT25G1010 Cannabis sativa HOM05D000450 ORTHO05D000327 8.6e-06 55.1 184 26.1
CAN.G363.32 Capsicum annuum HOM05D000450 ORTHO05D000327 8.6e-06 55.1 180 26.7
Ca_11717_v3 Cicer arietinum L. HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 29.3
Duzib093G2034 Durio zibethinus HOM05D000450 ORTHO05D000327 8.6e-06 55.1 175 26.3
Glyma.10G078500 Glycine max HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 29.3
HanXRQChr07g0195291 Helianthus annuus HOM05D000450 ORTHO05D000327 8.6e-06 55.1 183 27.3
Lj5g0022513 Lotus japonicus HOM05D000450 ORTHO05D000327 8.6e-06 55.1 177 29.9
Manes.09G047400 Manihot esculenta HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 29.3
PSO339G6629 Papaver somniferum HOM05D000450 ORTHO05D000327 8.6e-06 55.1 177 29.4
PSO384G4969 Papaver somniferum HOM05D000450 ORTHO05D000327 8.6e-06 55.1 177 29.4
TWI74G0052 Tripterygium wilfordii HOM05D000450 ORTHO05D000327 8.6e-06 55.1 181 28.7


User provided reference genes

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