Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 7.3e-153 543.9 279 100.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 4.4e-25 119.4 128 51.6
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 9.8e-25 118.2 275 34.9
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.9e-24 116.7 279 32.6
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.1e-23 114.8 280 34.3
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.1e-23 114.8 283 33.2
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.9e-23 114.0 281 34.2
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.6e-22 110.9 128 52.3
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.6e-22 110.9 253 32.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.7e-22 110.2 279 33.7
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.7e-22 110.2 265 33.6
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-22 110.2 149 49.0
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 4.6e-22 109.4 265 33.6
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.0e-22 109.0 279 34.1
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.8e-22 108.6 279 33.3
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 7.8e-22 108.6 279 36.2
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 7.8e-22 108.6 151 47.0
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.0e-21 108.2 189 39.7
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.0e-21 108.2 181 43.1
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.0e-21 108.2 281 36.7
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.3e-21 107.8 282 32.6
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.3e-21 107.8 132 49.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.0e-21 106.7 182 42.9
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.0e-21 106.7 283 37.1
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 3.0e-21 106.7 124 51.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.9e-21 106.3 283 32.5
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 3.9e-21 106.3 88 61.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 5.0e-21 105.9 282 31.6
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.0e-21 105.9 288 33.7
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.6e-21 105.5 279 31.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.6e-21 105.1 279 31.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 8.6e-21 105.1 149 47.7
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 8.6e-21 105.1 280 35.0
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 8.6e-21 105.1 281 33.5
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 8.6e-21 105.1 282 32.3
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.1e-20 104.8 286 34.3
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.1e-20 104.8 280 34.6
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.5e-20 104.4 282 34.0
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.5e-20 104.4 289 31.8
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-20 104.0 280 35.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.9e-20 104.0 148 48.6
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.5e-20 103.6 283 34.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-20 103.6 87 59.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-20 103.6 87 59.8
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 3.3e-20 103.2 274 32.8
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.3e-20 103.2 279 31.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 4.3e-20 102.8 288 33.7
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 4.3e-20 102.8 279 31.5
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 7.3e-20 102.1 150 48.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 7.3e-20 102.1 198 39.4
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 9.5e-20 101.7 280 33.6
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 9.5e-20 101.7 285 34.0
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.2e-19 101.3 164 40.9
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.2e-19 101.3 130 51.5
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.2e-19 101.3 130 51.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.2e-19 101.3 279 32.6
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.2e-19 101.3 285 35.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.6e-19 100.9 147 48.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.6e-19 100.9 275 34.2
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.6e-19 100.9 283 33.6
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.1e-19 100.5 86 60.5
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.1e-19 100.5 90 63.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.8e-19 100.1 279 32.3
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.8e-19 100.1 164 44.5
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.6e-19 99.8 272 32.7
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.6e-19 99.8 155 47.1
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.7e-19 99.4 280 31.8
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.7e-19 99.4 280 34.6
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.7e-19 99.4 149 45.6
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 4.7e-19 99.4 281 34.5
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 6.2e-19 99.0 284 33.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-18 98.2 144 43.8
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-18 98.2 149 42.3
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.1e-18 98.2 93 61.3
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.4e-18 97.8 276 34.1
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.4e-18 97.8 295 31.5
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.8e-18 97.4 276 34.1
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.8e-18 97.4 86 57.0
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.8e-18 97.4 280 33.9
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.3e-18 97.1 91 61.5
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.3e-18 97.1 82 61.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.1e-18 96.7 279 32.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.1e-18 96.7 86 57.0
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 4.0e-18 96.3 281 32.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.0e-18 96.3 280 34.3
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 6.8e-18 95.5 96 57.3
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 8.9e-18 95.1 153 45.8
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 8.9e-18 95.1 281 31.3
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.2e-17 94.7 279 33.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.2e-17 94.7 279 30.8
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.5e-17 94.4 287 33.8
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.5e-17 94.4 117 48.7
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.0e-17 94.0 266 35.7
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.0e-17 94.0 287 34.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.0e-17 94.0 281 35.2
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.0e-17 94.0 86 59.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.0e-17 94.0 147 44.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.6e-17 93.6 279 31.2
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.4e-17 93.2 147 44.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.4e-17 93.2 281 32.4
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 4.4e-17 92.8 88 54.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.5e-17 92.0 282 33.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 7.5e-17 92.0 155 45.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 7.5e-17 92.0 271 30.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 9.9e-17 91.7 122 46.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 9.9e-17 91.7 122 46.7
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 9.9e-17 91.7 284 30.3
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.7e-16 90.9 207 39.6
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 2.2e-16 90.5 276 31.2
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.2e-16 90.5 282 31.2
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.7e-16 89.7 165 42.4
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.7e-16 89.7 279 31.9
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.7e-16 89.7 282 31.9
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 4.9e-16 89.4 87 55.2
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.9e-16 89.4 83 60.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 6.4e-16 89.0 280 32.5
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-15 88.2 83 59.0
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.4e-15 87.8 280 28.9
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-15 87.8 85 60.0
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-15 87.8 191 37.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.4e-15 87.8 85 60.0
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.4e-15 87.8 191 37.7
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.4e-15 87.8 270 33.3
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.4e-15 87.8 151 40.4
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.9e-15 87.4 276 29.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.4e-15 87.0 197 35.0
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.4e-15 87.0 170 38.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 3.2e-15 86.7 277 31.0
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.1e-15 86.3 138 43.5
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.4e-15 85.9 276 29.7
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 5.4e-15 85.9 149 43.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.6e-14 84.3 87 55.2
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.6e-14 84.3 138 44.2
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.6e-14 84.3 269 32.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.6e-14 84.3 144 40.3
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.7e-14 83.6 283 32.5
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.7e-14 83.6 263 30.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.0e-14 82.4 274 29.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.0e-13 80.1 76 61.8
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.9e-13 79.7 153 41.2
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 5.1e-13 79.3 148 40.5
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 5.1e-13 79.3 163 39.9
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 6.6e-13 79.0 117 43.6
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 6.6e-13 79.0 268 31.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 8.6e-13 78.6 248 29.8
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.5e-12 77.8 209 36.4
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.5e-12 77.8 261 31.8
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.3e-12 76.6 143 42.7
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 4.3e-12 76.3 76 59.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.2e-11 74.7 236 30.1
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.2e-11 74.7 144 42.4
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 6.2e-11 72.4 98 44.9
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.4e-10 70.5 106 46.2
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 3.1e-10 70.1 106 48.1
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 4.0e-10 69.7 79 51.9
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 4.0e-10 69.7 38 84.2
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.2e-10 69.3 96 47.9
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 2.9e-08 63.5 41 70.7
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-06 58.2 61 52.5
SEGI_40815 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.1e-06 57.4 78 46.2


User provided reference genes

Program Settings