Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.2e-124 450.3 304 100.0
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.8e-27 127.5 230 41.7
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 5.7e-26 122.5 228 42.5
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.1e-24 118.2 227 42.3
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.1e-21 108.2 231 41.6
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.8e-19 100.9 233 38.2
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 5.7e-18 95.9 230 38.3
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.3e-17 92.4 234 35.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 5.3e-16 89.4 226 37.2
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 5.3e-16 89.4 229 38.4
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 7.7e-15 85.5 228 36.4
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.0e-14 85.1 220 36.8
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.7e-14 84.3 227 36.6
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.7e-14 84.3 220 36.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.7e-14 84.3 189 39.7
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.2e-14 84.0 217 38.2
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.2e-14 84.0 230 35.2
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.8e-14 83.2 220 33.2
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 3.8e-14 83.2 221 36.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.5e-14 82.4 220 35.0
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.5e-14 82.0 227 33.9
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 8.5e-14 82.0 229 34.9
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.1e-13 81.6 229 32.8
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.9e-13 80.9 229 34.9
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 3.2e-13 80.1 231 32.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.5e-13 79.3 225 33.8
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.6e-12 77.8 221 32.6
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.7e-12 77.0 219 35.2
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 6.1e-12 75.9 226 34.1
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 6.1e-12 75.9 219 35.6
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 8.0e-12 75.5 225 35.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.0e-11 75.1 225 33.8
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.0e-11 75.1 222 33.8
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.4e-11 74.7 66 60.6
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.4e-11 74.7 66 60.6
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.4e-11 74.7 184 35.9
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 4.0e-11 73.2 230 35.2
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 5.2e-11 72.8 231 34.2
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 5.2e-11 72.8 234 33.8
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.1e-10 71.6 218 35.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.5e-10 71.2 219 34.2
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.5e-10 71.2 227 33.9
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.5e-10 71.2 230 29.6
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.5e-10 71.2 221 32.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.5e-10 71.2 215 34.4
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 2.6e-10 70.5 224 34.4
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.3e-10 70.1 229 35.8
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.4e-10 69.7 226 34.5
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 5.7e-10 69.3 80 53.8
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 7.5e-10 68.9 228 33.8
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.3e-09 68.2 221 33.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.8e-09 67.0 158 33.5
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 3.7e-09 66.6 60 56.7
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 4.8e-09 66.2 235 33.6
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 4.8e-09 66.2 218 33.0
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 8.2e-09 65.5 240 30.0
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 8.2e-09 65.5 225 31.6
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 8.2e-09 65.5 158 34.8
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 1.4e-08 64.7 163 36.2
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.4e-08 64.7 53 54.7
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.4e-08 64.7 53 54.7
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.4e-08 64.7 226 31.9
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.4e-08 64.7 61 52.5
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.4e-08 64.7 91 47.3
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 2.4e-08 63.9 159 35.2
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.4e-08 63.9 47 57.4
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.4e-08 63.9 218 32.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.4e-08 63.9 57 56.1
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.4e-08 63.9 61 50.8
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 3.1e-08 63.5 231 29.0
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.1e-08 63.5 222 36.0
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 4.1e-08 63.2 90 41.1
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 4.1e-08 63.2 78 48.7
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.1e-08 63.2 162 37.0
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 5.3e-08 62.8 224 30.8
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 5.3e-08 62.8 234 32.1
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 5.3e-08 62.8 70 50.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 9.1e-08 62.0 49 55.1
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.2e-07 61.6 223 29.6
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-07 61.2 53 52.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.6e-07 61.2 217 28.6
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.6e-07 61.2 190 32.6
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.0e-07 60.8 53 52.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 2.7e-07 60.5 221 28.5
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 2.7e-07 60.5 222 33.3
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.7e-07 60.5 209 31.1
Potri.018G130100 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.7e-07 60.5 232 32.3
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 2.7e-07 60.5 70 42.9
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 4.5e-07 59.7 35 74.3
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 4.5e-07 59.7 217 31.3
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 5.9e-07 59.3 41 58.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.9e-07 59.3 227 32.6
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 5.9e-07 59.3 40 60.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 5.9e-07 59.3 41 58.5
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 5.9e-07 59.3 236 33.9
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.9e-07 59.3 159 37.1
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 7.7e-07 58.9 40 60.0
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 7.7e-07 58.9 68 47.1
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 7.7e-07 58.9 40 60.0
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 7.7e-07 58.9 226 31.9
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.0e-06 58.5 219 32.4
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.0e-06 58.5 60 51.7
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.3e-06 58.2 79 43.0
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.7e-06 57.8 216 29.6
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.2e-06 57.4 230 29.1
Sp6g24210 Schrenkiella parvula HOM05D001903 ORTHO05D001847 2.2e-06 57.4 232 30.6
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.2e-06 57.4 36 66.7
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 6.5e-06 55.8 159 32.1
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.5e-06 55.8 41 61.0
Sabra18G0110800 Salix brachista HOM05D001903 ORTHO05D001847 6.5e-06 55.8 231 30.3
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.5e-06 55.8 36 61.1
SEGI_20120 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.5e-06 55.8 36 63.9
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 8.5e-06 55.5 80 43.8
Sabra06G0050700 Salix brachista HOM05D001903 ORTHO05D001847 8.5e-06 55.5 226 31.0
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 8.5e-06 55.5 66 43.9
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 8.5e-06 55.5 42 57.1
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 8.5e-06 55.5 37 62.2


User provided reference genes

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