Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 0.0e+00 1096.3 599 100.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.0e-123 447.2 608 49.3
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 9.8e-123 444.9 608 48.7
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.4e-121 440.3 605 48.8
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.1e-117 427.2 589 48.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.6e-115 420.2 623 48.6
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.7e-114 417.5 593 48.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.7e-114 417.5 600 47.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-113 414.1 331 69.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.9e-113 414.1 604 47.0
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 4.1e-113 412.9 622 45.8
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 5.4e-113 412.5 607 46.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.6e-112 411.0 611 46.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.7e-112 410.2 617 45.2
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.7e-112 410.2 635 45.5
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.0e-111 408.3 618 46.6
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.7e-111 407.5 604 46.7
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.0e-111 406.8 610 46.1
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.0e-111 406.8 604 46.4
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.0e-111 406.8 612 45.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 6.6e-111 405.6 635 45.2
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.1e-110 404.8 332 66.0
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.1e-110 404.8 446 56.7
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.5e-110 404.4 613 46.5
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.5e-110 403.7 448 56.2
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 3.3e-110 403.3 603 47.4
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.2e-109 401.4 611 46.3
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 4.7e-109 399.4 445 54.6
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.4e-108 397.9 623 45.9
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.8e-108 397.5 468 52.8
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 5.2e-108 396.0 436 53.9
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 8.9e-108 395.2 611 45.0
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 3.4e-107 393.3 599 46.2
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 4.4e-107 392.9 612 43.8
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.7e-106 391.0 601 44.3
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 2.2e-106 390.6 606 43.9
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 3.8e-106 389.8 614 44.3
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.8e-106 389.8 339 64.9
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.4e-106 389.0 596 45.6
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.1e-105 388.3 445 53.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 5.4e-105 386.0 527 48.8
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.4e-105 386.0 620 44.0
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.6e-104 384.4 561 45.5
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 2.1e-104 384.0 609 45.3
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 2.7e-104 383.6 608 45.2
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.5e-104 383.3 661 42.8
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.0e-103 381.7 600 45.3
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.7e-103 380.9 425 53.4
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 3.0e-103 380.2 598 44.1
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.9e-103 379.8 616 44.2
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 3.9e-103 379.8 635 44.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 6.6e-103 379.0 605 44.0
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.6e-103 379.0 610 42.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.1e-102 378.3 606 44.7
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 7.3e-102 375.6 633 42.2
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 9.6e-102 375.2 588 45.1
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 9.6e-102 375.2 622 42.3
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.6e-101 374.4 627 43.5
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.8e-101 373.6 622 43.4
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 8.1e-101 372.1 593 44.4
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 8.1e-101 372.1 520 48.7
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.4e-100 371.3 621 43.2
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.1e-100 370.2 351 60.1
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.5e-99 367.9 587 43.3
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.4e-99 366.3 372 57.8
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.7e-98 364.4 627 42.4
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.2e-98 364.0 420 53.1
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 3.8e-98 363.2 611 43.4
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 4.9e-98 362.8 615 42.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.4e-97 361.3 605 42.0
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 7.1e-97 359.0 615 42.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.6e-95 352.4 601 41.8
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.1e-94 351.7 613 43.4
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.1e-94 351.7 543 46.0
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.5e-94 350.5 470 47.4
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 2.5e-94 350.5 617 41.5
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.3e-93 348.2 616 41.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.3e-93 348.2 379 54.9
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.3e-93 348.2 524 45.0
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.1e-93 345.5 630 41.0
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.1e-92 345.1 603 42.0
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.2e-91 341.7 622 42.1
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.5e-91 341.3 607 40.7
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 2.0e-91 340.9 620 41.0
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 4.5e-91 339.7 622 40.0
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 2.2e-90 337.4 605 41.5
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.4e-89 334.7 534 44.4
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-88 331.6 452 48.2
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.2e-88 331.6 615 41.6
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 2.7e-88 330.5 611 41.7
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.7e-88 330.5 487 46.0
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.7e-88 330.5 487 46.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 4.6e-88 329.7 606 40.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 4.6e-88 329.7 607 39.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.0e-87 327.0 621 40.4
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 5.6e-86 322.8 618 39.0
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-85 320.9 560 42.3
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.4e-84 317.4 599 39.6
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.0e-84 316.6 606 40.1
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.9e-82 310.5 655 39.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 8.7e-71 272.3 492 42.7
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.0e-68 262.3 315 52.4
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 6.5e-66 256.1 602 36.0
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 4.2e-65 253.4 601 35.9
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.1e-56 224.6 529 32.7
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.2e-53 212.6 505 33.3
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.3e-50 205.3 345 38.8
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 2.2e-50 204.5 529 33.1
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 3.6e-48 197.2 282 45.0
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.0e-47 195.7 224 53.1
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 5.0e-42 176.8 373 37.3
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 8.0e-40 169.5 538 28.8
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.3e-37 159.5 401 36.4
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.1e-36 159.1 225 46.7
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 2.4e-36 157.9 408 36.8
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 2.9e-34 151.0 193 47.7
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 5.0e-34 150.2 125 62.4
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.3e-31 141.4 412 35.2
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 5.2e-31 140.2 111 67.6
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.4e-30 137.1 111 58.6
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.3e-29 135.6 112 67.0
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.1e-28 132.5 111 57.7
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 7.0e-28 129.8 116 55.2
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 3.5e-27 127.5 118 56.8
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.3e-26 124.8 112 55.4
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 3.8e-26 124.0 138 57.2
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 3.6e-24 117.5 136 56.6
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 4.7e-24 117.1 138 55.8
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.4e-23 115.5 89 66.3
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.9e-23 112.8 228 34.2
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.0e-22 111.7 89 64.0
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 9.2e-20 102.8 88 62.5
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 1.1e-17 95.9 339 32.7
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.6e-17 93.6 523 24.1
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 5.2e-15 87.0 83 57.8
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 3.6e-08 64.3 150 30.0
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 6.2e-08 63.5 315 29.5
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 4.0e-07 60.8 45 71.1
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.5e-06 58.9 66 53.0


User provided reference genes

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