Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 0.0e+00 3041.5 1560 100.0
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 0.0e+00 2464.9 1563 79.9
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 0.0e+00 2432.5 1564 78.7
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 0.0e+00 2431.4 1563 79.1
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 0.0e+00 2408.6 1560 78.6
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 0.0e+00 2407.9 1565 78.6
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2402.9 1566 78.0
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2400.9 1566 78.0
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 0.0e+00 2385.9 1552 78.2
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2384.8 1565 77.5
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2384.4 1565 77.5
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 0.0e+00 2380.9 1562 77.5
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 0.0e+00 2376.3 1564 77.7
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2374.7 1564 77.5
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 0.0e+00 2374.7 1563 77.7
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2374.4 1564 77.4
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2373.2 1563 77.4
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2371.3 1564 77.7
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2357.4 1564 77.0
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2352.8 1562 76.8
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2352.4 1565 76.5
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2352.0 1564 77.1
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2349.3 1564 76.3
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 0.0e+00 2347.0 1577 76.5
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2345.5 1566 76.3
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2343.9 1566 76.5
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 0.0e+00 2342.8 1564 76.2
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 0.0e+00 2342.4 1573 76.2
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2341.2 1564 76.1
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 0.0e+00 2340.1 1555 76.7
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 0.0e+00 2339.7 1560 76.3
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2339.3 1564 76.0
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 0.0e+00 2338.5 1560 76.3
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 0.0e+00 2335.5 1551 76.2
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 0.0e+00 2335.5 1556 75.8
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2333.9 1553 76.2
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 2333.9 1554 76.8
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2332.0 1557 76.2
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 0.0e+00 2331.2 1566 76.2
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2330.8 1564 75.8
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 0.0e+00 2330.8 1566 76.1
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 0.0e+00 2330.4 1551 76.5
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2328.5 1561 75.5
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2328.1 1556 76.2
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 0.0e+00 2327.7 1555 76.0
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 0.0e+00 2327.4 1598 74.7
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 0.0e+00 2324.3 1563 76.2
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2324.3 1552 76.2
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 0.0e+00 2323.9 1563 76.0
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2322.4 1560 75.3
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 0.0e+00 2320.8 1567 75.1
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 0.0e+00 2320.4 1565 75.9
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 0.0e+00 2320.0 1564 75.6
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 0.0e+00 2315.8 1560 75.5
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 0.0e+00 2312.0 1560 75.1
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 0.0e+00 2312.0 1556 75.6
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2308.5 1556 75.4
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 0.0e+00 2308.5 1606 73.9
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2307.3 1552 75.6
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2304.6 1562 75.4
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2303.9 1557 75.4
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2303.5 1553 75.5
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2301.6 1557 75.1
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 2301.2 1564 75.1
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 2300.0 1546 75.2
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2298.9 1559 75.0
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2298.1 1559 75.0
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 2296.9 1557 75.0
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 0.0e+00 2296.5 1557 75.6
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2295.4 1558 75.0
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 0.0e+00 2295.0 1560 74.9
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2295.0 1557 75.1
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 2293.8 1550 75.3
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2292.7 1558 75.1
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2292.3 1560 75.0
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 0.0e+00 2292.3 1563 75.1
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2290.4 1554 75.0
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2290.0 1563 74.5
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 0.0e+00 2288.5 1559 74.0
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2286.9 1555 74.9
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2283.4 1558 74.8
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 0.0e+00 2283.1 1563 75.1
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2280.8 1554 74.8
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2277.7 1584 73.7
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2276.9 1565 74.0
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2272.7 1556 74.2
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 2268.8 1684 70.7
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 0.0e+00 2266.9 1563 73.8
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2265.0 1553 74.4
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2259.6 1601 73.0
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 0.0e+00 2258.4 1559 74.7
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2253.4 1553 73.9
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 0.0e+00 2251.1 1592 73.1
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2244.2 1482 77.3
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 0.0e+00 2243.0 1549 75.0
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2242.2 1562 73.2
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 2241.1 1529 75.1
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 0.0e+00 2239.9 1562 74.0
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2228.0 1554 72.8
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 0.0e+00 2226.1 1547 74.1
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2225.3 1556 73.3
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2222.6 1605 71.3
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2219.1 1558 72.9
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2218.7 1552 73.2
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2207.2 1550 72.2
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2206.8 1552 72.2
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2206.4 1556 72.3
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2202.2 1558 72.1
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 0.0e+00 2193.7 1556 72.0
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2192.9 1571 71.5
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2187.5 1553 72.8
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 0.0e+00 2164.0 1559 72.4
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2132.1 1746 65.8
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2123.2 1557 70.5
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 2108.2 1549 70.0
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 0.0e+00 2094.7 1550 69.7
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2009.2 1442 71.2
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 0.0e+00 1994.9 1562 65.7
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 1942.2 1397 71.0
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 0.0e+00 1917.1 1317 73.3
Nitab4.5_0005660g0020 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 1887.8 1293 74.9
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 0.0e+00 1855.5 1354 70.9
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 0.0e+00 1841.2 1611 61.0
Cpa.g.sc6.248 Carica papaya HOM05D002880 ORTHO05D003450 0.0e+00 1637.1 1096 76.6
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 0.0e+00 1635.9 1091 76.4
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 0.0e+00 1521.9 939 82.6
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 0.0e+00 1422.5 977 76.0
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 1364.0 935 75.4
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 0.0e+00 1143.3 1587 43.9
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 3.6e-286 989.2 744 68.5
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 8.1e-278 961.4 623 77.7
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 2.0e-252 877.1 1790 34.0
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 2.1e-185 654.4 2197 27.1
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 1.5e-175 621.7 503 65.2
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 5.3e-168 596.7 398 73.9
HPP92_000449 Vanilla planifolia HOM05D002880 ORTHO05D003450 1.9e-149 535.0 361 74.5
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 3.6e-148 530.8 1628 27.5
AL5G13110 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.4e-136 491.5 1058 36.3
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.0e-134 486.1 333 75.1
HPP92_000448 Vanilla planifolia HOM05D002880 ORTHO05D003450 1.5e-130 472.2 357 66.9
ATR1041G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.2e-106 392.9 198 99.0
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 2.3e-102 378.6 398 55.0
Os07g0645200 Oryza sativa ssp. japonica HOM05D002880 ORTHO05D003450 4.4e-98 364.4 265 69.8
Gohir.A11G175528 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.3e-85 320.5 191 86.4
Gohir.A11G175584 Gossypium hirsutum HOM05D002880 ORTHO05D003450 3.2e-80 305.1 192 80.7
Gohir.A11G175556 Gossypium hirsutum HOM05D002880 ORTHO05D003450 4.3e-69 268.1 217 66.8
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 3.6e-68 265.0 145 88.3
unitig_0.g2 Utricularia gibba HOM05D002880 ORTHO05D003450 9.0e-59 233.8 159 78.0
Atru.chr1.4030 Acer truncatum HOM05D002880 ORTHO05D003450 1.0e-54 220.3 146 76.7
Actinidia00882 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.0e-54 220.3 242 52.9
Cpa.g.sc6.249 Carica papaya HOM05D002880 ORTHO05D003450 1.1e-51 210.3 124 81.5
Atru.chr1.4017 Acer truncatum HOM05D002880 ORTHO05D003450 1.2e-50 206.8 298 46.6
Rhsim10G0212500 Rhododendron simsii HOM05D002880 ORTHO05D003450 4.8e-44 184.9 113 80.5
Gohir.D11G183201 Gossypium hirsutum HOM05D002880 ORTHO05D003450 8.2e-44 184.1 110 82.7
vmacro23471 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 3.8e-41 175.3 205 50.2
Psat4g093120 Pisum sativum HOM05D002880 ORTHO05D003450 4.2e-40 171.8 104 81.7
Atru.chr1.4014 Acer truncatum HOM05D002880 ORTHO05D003450 1.1e-37 163.7 199 50.3
COL.COLO4_17676 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.3e-33 150.2 105 75.2
Rhsim10G0212400 Rhododendron simsii HOM05D002880 ORTHO05D003450 1.8e-30 139.8 103 69.9
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 2.0e-29 136.3 329 34.7
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 7.4e-29 134.4 161 49.1
Atru.chr1.4018 Acer truncatum HOM05D002880 ORTHO05D003450 1.3e-28 133.7 227 41.9
Gohir.A11G175612 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.1e-27 130.6 87 77.0
Psat6g157240 Pisum sativum HOM05D002880 ORTHO05D000335 2.0e-26 126.3 83 69.9
MBI14_g08216_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 1.7e-25 123.2 170 47.6
COL.COLO4_18103 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.2e-25 122.9 80 78.8
SEGI_03562 Sequoiadendron giganteum HOM05D002880 ORTHO05D003450 6.7e-22 111.3 63 85.7
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 2.6e-21 109.4 113 56.6
Psat6g156840 Pisum sativum HOM05D000280 ORTHO05D000632 4.8e-20 105.1 68 67.6
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.1e-19 104.0 82 68.3
COL.COLO4_37332 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.6e-18 99.4 69 75.4
Actinidia15056 Actinidia chinensis HOM05D002880 ORTHO05D001283 1.1e-16 94.0 358 29.3
Psat5g186400 Pisum sativum HOM05D000280 ORTHO05D000632 2.0e-10 73.2 43 76.7
VMungo1080G0556 Vigna mungo HOM05D002613 ORTHO05D003140 2.7e-07 62.8 37 78.4
Actinidia22980 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.4e-06 60.5 52 59.6


User provided reference genes

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