Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 9.2e-46 186.4 87 100.0
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.2e-29 132.9 87 74.7
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 2.2e-23 112.1 84 61.9
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 6.4e-23 110.5 88 61.4
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.2e-21 106.3 87 62.1
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 3.5e-21 104.8 82 62.2
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 7.8e-21 103.6 84 60.7
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.0e-20 103.2 85 58.8
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.7e-20 102.4 87 56.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.7e-20 102.4 85 58.8
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.3e-20 102.1 88 61.4
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.3e-20 102.1 83 59.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 3.0e-20 101.7 82 58.5
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.9e-20 101.3 83 56.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.9e-20 101.3 85 57.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.1e-20 100.9 88 60.2
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 5.1e-20 100.9 85 62.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 6.6e-20 100.5 86 60.5
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 6.6e-20 100.5 85 57.6
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.6e-20 100.1 88 59.1
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 8.6e-20 100.1 86 59.3
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 8.6e-20 100.1 84 60.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 8.6e-20 100.1 85 57.6
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 8.6e-20 100.1 81 60.5
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.1e-19 99.8 87 56.3
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.1e-19 99.8 88 58.0
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.1e-19 99.8 87 55.2
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.5e-19 99.4 84 57.1
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.9e-19 99.0 85 55.3
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.5e-19 98.6 85 58.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.5e-19 98.6 88 58.0
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.3e-19 98.2 81 60.5
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.3e-19 98.2 85 57.6
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 3.3e-19 98.2 88 59.1
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 4.3e-19 97.8 86 55.8
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 5.6e-19 97.4 85 57.6
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 5.6e-19 97.4 85 58.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.6e-19 97.4 85 58.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 5.6e-19 97.4 84 56.0
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 7.3e-19 97.1 85 57.6
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 7.3e-19 97.1 85 60.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 9.5e-19 96.7 85 55.3
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 9.5e-19 96.7 85 58.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.2e-18 96.3 84 56.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.2e-18 96.3 84 56.0
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-18 96.3 85 58.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.6e-18 95.9 83 56.6
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.6e-18 95.9 85 54.1
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.6e-18 95.9 87 55.2
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.6e-18 95.9 85 56.5
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.1e-18 95.5 83 55.4
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 2.1e-18 95.5 85 55.3
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 2.1e-18 95.5 85 55.3
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.1e-18 95.5 85 57.6
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 2.1e-18 95.5 82 57.3
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 2.8e-18 95.1 81 59.3
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.8e-18 95.1 85 58.8
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.8e-18 95.1 88 54.5
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 3.6e-18 94.7 81 58.0
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 4.7e-18 94.4 85 60.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 4.7e-18 94.4 85 60.0
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.7e-18 94.4 85 57.6
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.2e-18 94.0 87 57.5
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.1e-18 93.6 85 57.6
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.1e-18 93.6 85 57.6
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.1e-17 93.2 88 55.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.4e-17 92.8 86 54.7
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.4e-17 92.8 83 55.4
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.4e-17 92.8 85 55.3
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.4e-17 92.8 88 55.7
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.8e-17 92.4 87 51.7
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.4e-17 92.0 69 66.7
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.4e-17 92.0 83 56.6
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 3.1e-17 91.7 84 53.6
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 5.2e-17 90.9 83 49.4
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 5.2e-17 90.9 80 57.5
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 6.8e-17 90.5 88 52.3
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 8.9e-17 90.1 80 58.8
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.2e-16 89.7 88 58.0
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.5e-16 89.4 70 60.0
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.0e-16 89.0 83 54.2
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 2.0e-16 89.0 83 51.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.4e-16 88.2 83 51.8
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 4.4e-16 87.8 86 48.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 4.4e-16 87.8 85 52.9
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.3e-15 86.3 82 48.8
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.7e-15 85.9 82 48.8
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.7e-15 85.9 85 50.6
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.7e-15 85.9 86 51.2
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 3.8e-15 84.7 86 50.0
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.8e-15 84.7 80 55.0
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.9e-15 84.3 79 53.2
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.4e-15 83.6 76 55.3
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.4e-14 82.0 82 47.6
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 2.4e-14 82.0 74 58.1
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 4.2e-14 81.3 86 50.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 4.2e-14 81.3 86 50.0
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 4.2e-14 81.3 76 53.9
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.4e-14 80.9 86 50.0
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 7.1e-14 80.5 84 46.4
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 7.1e-14 80.5 86 47.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 9.2e-14 80.1 86 50.0
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.2e-13 79.7 86 48.8
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.2e-13 79.7 86 48.8
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.6e-13 79.3 86 48.8
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.5e-13 78.2 86 45.3
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 3.5e-13 78.2 84 47.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 3.5e-13 78.2 75 53.3
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.5e-13 78.2 83 53.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.0e-12 76.6 90 44.4
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.3e-12 76.3 80 51.2
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 2.3e-12 75.5 67 55.2
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.0e-12 75.1 85 48.2
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.0e-12 75.1 85 48.2
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.0e-12 75.1 85 48.2
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 5.1e-12 74.3 86 44.2
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 8.7e-12 73.6 88 42.0
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 3.3e-11 71.6 80 45.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 7.3e-11 70.5 94 42.6
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.1e-09 66.6 94 41.5
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.1e-09 66.6 70 47.1
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 1.4e-09 66.2 94 41.5
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.4e-09 66.2 94 41.5
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-09 65.9 97 39.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.4e-09 65.5 94 41.5
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 4.0e-09 64.7 100 39.0
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.6e-08 62.0 81 35.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 4.4e-08 61.2 74 45.9
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.9e-08 60.1 72 43.1
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 1.3e-07 59.7 61 47.5
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.9e-07 58.5 97 35.1
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.8e-07 58.2 49 59.2
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.1e-06 56.6 97 36.1
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.4e-06 54.3 98 34.7


User provided reference genes

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