Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 3.9e-108 394.8 199 100.0
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 3.4e-72 275.4 179 74.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 8.5e-71 270.8 179 75.4
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.1e-69 266.2 180 75.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.7e-69 265.8 179 73.7
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 6.1e-69 264.6 178 74.2
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.0e-68 262.3 178 72.5
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 5.1e-68 261.5 178 73.6
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 5.1e-68 261.5 178 73.0
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 6.7e-68 261.2 179 72.6
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 6.7e-68 261.2 179 72.6
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 6.7e-68 261.2 178 72.5
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.5e-67 260.0 169 74.6
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.3e-67 258.8 174 73.6
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.3e-67 258.8 179 72.1
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 5.7e-67 258.1 179 71.5
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.7e-67 258.1 179 70.9
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 7.4e-67 257.7 169 76.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.6e-66 256.5 179 70.4
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.8e-66 255.8 179 72.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 3.7e-66 255.4 178 71.9
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.3e-66 254.6 179 69.8
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.4e-65 253.4 179 71.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.4e-65 253.4 179 71.5
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.4e-65 253.4 179 71.5
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.8e-65 253.1 179 72.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 2.4e-65 252.7 176 71.0
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.1e-65 251.9 179 70.9
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 5.3e-65 251.5 179 70.4
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.9e-65 251.1 170 73.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.1e-65 250.8 179 69.8
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.2e-64 250.4 179 69.3
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.5e-64 250.0 179 69.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.6e-64 249.2 179 69.3
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.4e-64 248.8 179 69.3
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.5e-64 248.4 179 69.3
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.9e-64 248.1 180 70.6
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.7e-64 247.7 179 68.7
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 7.7e-64 247.7 173 69.9
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 7.7e-64 247.7 179 68.7
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 7.7e-64 247.7 169 71.6
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.0e-63 247.3 179 68.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.0e-63 247.3 181 69.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.3e-63 246.9 179 70.4
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-63 246.9 169 71.6
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.7e-63 246.5 179 70.4
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.7e-63 246.5 169 72.2
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-63 246.1 180 70.0
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.2e-63 246.1 179 69.8
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.9e-63 245.7 179 69.3
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 3.8e-63 245.4 172 72.1
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 5.0e-63 245.0 179 68.2
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.0e-63 245.0 179 67.6
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 6.5e-63 244.6 178 71.3
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.5e-63 244.6 169 71.6
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 8.5e-63 244.2 179 69.8
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 8.5e-63 244.2 180 68.3
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-62 243.8 179 69.8
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-62 243.8 180 69.4
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-62 243.8 178 68.0
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-62 243.4 179 69.3
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.4e-62 243.4 169 72.8
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 2.5e-62 242.7 168 72.0
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 4.2e-62 241.9 179 66.5
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.2e-62 241.9 169 72.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.5e-62 241.5 179 66.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 9.4e-62 240.7 179 68.2
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.2e-61 240.4 179 67.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.2e-61 240.4 165 73.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.6e-61 240.0 178 66.9
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.6e-61 240.0 179 68.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.6e-61 240.0 169 70.4
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.1e-61 239.6 179 66.5
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.7e-61 239.2 179 68.7
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 3.6e-61 238.8 168 72.0
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.6e-61 238.8 179 67.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.6e-61 238.8 179 68.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.6e-61 238.8 179 68.2
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 7.9e-61 237.7 179 67.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 7.9e-61 237.7 179 67.6
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 7.9e-61 237.7 179 66.5
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 7.9e-61 237.7 169 72.2
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.0e-60 237.3 179 67.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.4e-60 236.9 172 68.6
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.8e-60 236.5 169 70.4
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.8e-60 236.5 169 69.8
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.0e-60 235.7 179 65.9
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 3.9e-60 235.3 171 69.0
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.9e-60 235.3 192 65.1
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 3.9e-60 235.3 169 69.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 3.9e-60 235.3 179 66.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 6.7e-60 234.6 196 63.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 8.8e-60 234.2 179 67.6
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 8.8e-60 234.2 168 71.4
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 8.8e-60 234.2 171 69.0
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.5e-59 233.4 172 70.9
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 2.0e-59 233.0 174 68.4
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 7.4e-59 231.1 169 66.9
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 9.7e-59 230.7 206 59.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.3e-58 230.3 157 73.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.2e-58 229.6 170 68.2
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.8e-58 229.2 179 66.5
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.8e-58 229.2 179 65.9
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 3.7e-58 228.8 174 67.2
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.7e-58 228.8 170 67.6
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.7e-58 228.8 179 64.2
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 8.2e-58 227.6 174 66.7
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.1e-57 227.3 174 67.2
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.4e-57 226.9 172 65.7
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.8e-57 226.5 174 66.7
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.1e-57 225.7 179 65.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 6.9e-57 224.6 170 67.6
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 6.9e-57 224.6 174 66.1
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 6.9e-57 224.6 170 68.2
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 9.1e-57 224.2 169 66.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.5e-56 223.4 170 67.1
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.4e-56 222.2 221 55.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 7.7e-56 221.1 170 65.3
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.3e-55 220.3 159 68.6
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 5.0e-55 218.4 170 65.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.6e-53 213.4 162 68.5
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 3.6e-53 212.2 170 63.5
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 5.2e-52 208.4 175 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.5e-51 206.8 162 61.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 7.4e-51 204.5 150 69.3
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.3e-50 203.8 180 56.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 2.2e-50 203.0 150 68.7
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.1e-49 200.7 169 62.1
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.5e-48 195.3 145 67.6
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 7.7e-48 194.5 163 60.7
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.9e-47 192.6 164 56.7
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.4e-44 183.7 165 55.8
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.3e-42 177.2 120 74.2
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.4e-41 172.9 115 75.7
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.1e-41 172.2 134 67.2
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.5e-40 169.1 170 55.3
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.2e-38 162.2 169 54.4
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 2.7e-37 159.5 117 71.8
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 8.8e-36 154.5 162 51.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.0e-35 153.3 164 52.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 9.8e-35 151.0 171 49.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 6.3e-34 148.3 222 41.0
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-33 147.1 191 48.2
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.0e-31 141.0 105 65.7
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 8.5e-31 137.9 161 47.2
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.8e-28 128.3 93 67.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.6e-27 126.3 83 74.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.3e-26 124.0 98 65.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.7e-26 123.6 89 68.5
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.2e-26 123.2 142 47.2
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 8.3e-26 121.3 94 66.0
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 8.3e-26 121.3 86 69.8
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 4.1e-25 119.0 83 69.9
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 2.0e-24 116.7 98 62.2
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.5e-22 110.5 82 67.1
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 8.0e-21 104.8 75 68.0
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.5e-19 100.5 138 45.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 6.4e-18 95.1 117 49.6
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 8.0e-13 78.2 58 65.5
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 5.8e-11 72.0 171 35.7
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.9e-10 69.7 42 76.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.9e-09 67.0 48 66.7
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 3.2e-09 66.2 54 59.3
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.7e-08 63.2 146 33.6
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 6.0e-08 62.0 85 42.4


User provided reference genes

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