Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 2.3e-132 475.7 269 100.0
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.8e-100 369.8 195 87.2
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 7.6e-99 364.4 198 83.3
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 9.9e-99 364.0 208 83.2
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 2.2e-98 362.8 209 80.9
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 4.9e-98 361.7 200 83.5
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 8.4e-98 360.9 198 83.3
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 1.4e-97 360.1 204 81.4
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.4e-97 360.1 197 83.2
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 1.4e-97 360.1 202 82.2
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.9e-97 359.8 193 86.0
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 2.4e-97 359.4 194 85.6
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 2.4e-97 359.4 194 85.6
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 3.2e-97 359.0 200 83.0
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 4.2e-97 358.6 196 84.2
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 4.2e-97 358.6 197 82.2
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 4.2e-97 358.6 194 85.1
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 4.2e-97 358.6 199 82.9
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 7.1e-97 357.8 203 81.8
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 9.3e-97 357.5 198 82.8
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 1.2e-96 357.1 206 79.1
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 1.2e-96 357.1 197 83.2
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 1.2e-96 357.1 193 85.0
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 2.7e-96 355.9 196 83.2
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 2.7e-96 355.9 197 84.3
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 2.7e-96 355.9 197 84.3
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 3.5e-96 355.5 207 80.2
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.6e-96 355.1 197 83.8
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 6.0e-96 354.8 197 82.2
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.0e-96 354.8 203 82.3
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 7.9e-96 354.4 208 80.3
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 7.9e-96 354.4 198 81.8
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 7.9e-96 354.4 198 81.8
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 1.8e-95 353.2 197 82.2
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 2.3e-95 352.8 198 80.3
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 2.3e-95 352.8 198 80.3
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 3.9e-95 352.1 215 77.2
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 8.7e-95 350.9 196 83.2
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 8.7e-95 350.9 196 82.7
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 1.5e-94 350.1 197 79.7
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.9e-94 349.7 204 80.4
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.9e-94 349.7 215 77.2
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 2.5e-94 349.4 205 80.5
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 2.5e-94 349.4 200 80.0
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 9.6e-94 347.4 197 82.2
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 9.6e-94 347.4 201 79.1
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 3.6e-93 345.5 196 80.1
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 3.6e-93 345.5 197 80.7
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 4.8e-93 345.1 198 81.3
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 4.8e-93 345.1 196 82.1
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 4.8e-93 345.1 201 76.1
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 6.2e-93 344.7 201 81.1
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 8.1e-93 344.4 193 80.8
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 5.3e-92 341.7 201 80.1
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 9.0e-92 340.9 201 81.6
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 9.0e-92 340.9 201 81.6
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.5e-91 340.1 194 83.0
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 4.5e-91 338.6 201 77.1
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 4.5e-91 338.6 197 78.2
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 5.8e-91 338.2 202 77.2
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 5.8e-91 338.2 201 81.1
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 9.9e-91 337.4 197 77.7
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.3e-90 337.0 197 78.7
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.7e-90 336.7 200 76.5
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 2.2e-90 336.3 197 78.2
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 2.2e-90 336.3 200 77.5
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 2.9e-90 335.9 196 78.6
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 2.9e-90 335.9 200 77.0
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 1.1e-89 334.0 202 76.7
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 1.1e-89 334.0 202 76.7
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 1.4e-89 333.6 197 77.7
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 1.2e-88 330.5 197 77.2
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 1.6e-88 330.1 194 79.4
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 3.5e-88 328.9 193 76.2
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 4.6e-88 328.6 214 73.4
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 6.0e-88 328.2 203 73.4
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 1.0e-87 327.4 193 77.7
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 1.9e-86 323.2 224 68.8
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 2.5e-86 322.8 202 73.3
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 8.1e-85 317.8 209 70.8
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 2.4e-84 316.2 193 73.1
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 9.0e-84 314.3 203 72.4
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 2.0e-83 313.2 229 67.7
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 5.8e-83 311.6 240 64.6
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 5.8e-83 311.6 193 74.6
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 2.2e-82 309.7 199 75.4
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 1.9e-78 296.6 206 69.9
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 7.4e-78 294.7 209 68.4
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 2.1e-77 293.1 186 73.1
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-77 291.6 216 65.3
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 6.3e-77 291.6 168 79.2
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 2.0e-75 286.6 164 79.3
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 4.5e-75 285.4 274 55.1
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 6.1e-72 275.0 162 77.2
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 1.3e-71 273.9 230 61.7
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 7.4e-70 268.1 148 85.1
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 3.7e-69 265.8 148 83.1
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 2.5e-57 226.5 128 82.0
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 3.9e-55 219.2 128 80.5
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 1.6e-51 207.2 187 58.8
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 2.0e-51 206.8 119 77.3
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.2e-50 203.4 121 77.7
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 7.2e-49 198.4 148 67.6
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 8.8e-47 191.4 102 86.3
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 1.1e-44 184.5 110 80.0
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.2e-43 181.0 106 82.1
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 7.7e-43 178.3 201 49.3
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 2.2e-37 160.2 421 30.4
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 1.6e-35 154.1 94 71.3
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 7.7e-35 151.8 213 45.5
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.5e-30 137.5 71 83.1
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.4e-28 131.0 81 71.6
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 2.7e-27 126.7 72 76.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 2.1e-16 90.5 96 50.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-07 59.7 37 75.7


User provided reference genes

Program Settings