Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G036 Amborella trichopoda HOM05D015801 ORTHO05D011070 4.4e-247 857.4 414 100.0
ATR0598G102 Amborella trichopoda HOM05D015801 ORTHO05D011070 7.6e-215 750.4 412 88.6
ATR0681G009 Amborella trichopoda HOM05D015801 ORTHO05D011070 2.8e-137 492.7 410 58.3
ATR0594G199 Amborella trichopoda HOM05D015801 ORTHO05D011070 2.7e-135 486.1 404 59.7
ATR1127G193 Amborella trichopoda HOM05D015801 ORTHO05D011070 9.2e-104 381.3 394 50.0
ATR1127G159 Amborella trichopoda HOM05D015801 ORTHO05D011070 2.6e-74 283.5 402 42.5
ATR0594G072 Amborella trichopoda HOM05D015801 ORTHO05D011070 5.5e-56 222.6 178 62.4
ATR0681G100 Amborella trichopoda HOM05D015022 ORTHO05D011070 1.1e-48 198.4 383 34.5
ATR0681G080 Amborella trichopoda HOM05D015022 ORTHO05D011070 2.3e-38 164.1 419 29.4
ATR0824G139 Amborella trichopoda HOM05D015022 ORTHO05D011070 6.7e-38 162.5 400 32.0
ATR0824G055 Amborella trichopoda HOM05D015022 ORTHO05D011070 7.5e-37 159.1 399 31.6
ATR0772G161 Amborella trichopoda HOM05D015022 ORTHO05D011070 1.5e-29 134.8 401 29.2
ATR0681G217 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.6e-23 114.8 236 33.5
ATR0796G283 Amborella trichopoda HOM05D015022 ORTHO05D011070 1.6e-23 114.8 317 29.3
ATR0866G001 Amborella trichopoda HOM05D015022 ORTHO05D011070 3.6e-23 113.6 399 27.1
ATR1136G071 Amborella trichopoda HOM05D011842 ORTHO05D011366 4.9e-20 103.2 378 26.7
ATR0736G026 Amborella trichopoda HOM05D012411 ORTHO05D011070 7.8e-18 95.9 291 27.5
ATR1136G141 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.7e-17 94.7 295 30.2
ATR1136G003 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.5e-16 91.7 329 27.4
ATR1096G135 Amborella trichopoda HOM05D012411 ORTHO05D011070 2.5e-16 90.9 311 27.0
ATR0794G151 Amborella trichopoda HOM05D013040 ORTHO05D011366 1.0e-14 85.5 279 27.6
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.3e-14 84.3 334 28.4
A03p39720 Brassica napus HOM05D000007 ORTHO05D011249 6.8e-14 82.8 306 26.5
Aa31LG8G3350 Aethionema arabicum HOM05D000007 ORTHO05D011249 8.9e-14 82.4 305 24.3
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 8.9e-14 82.4 319 28.2
ATR0736G153 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.5e-13 81.6 322 26.1
BraA03t13122Z Brassica rapa HOM05D000007 ORTHO05D011249 4.4e-13 80.1 282 26.6
Gohir.D04G045600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 7.5e-13 79.3 340 27.9
Thhalv10022274m.g Eutrema salsugineum HOM05D000007 ORTHO05D011249 1.3e-12 78.6 293 26.3
PSO675G0641 Papaver somniferum HOM05D000007 ORTHO05D000676 1.7e-12 78.2 284 27.1
ATR0763G270 Amborella trichopoda HOM05D011842 ORTHO05D011366 2.2e-12 77.8 318 26.4
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.2e-12 77.8 294 26.2
ATR0605G307 Amborella trichopoda HOM05D011842 ORTHO05D011366 3.7e-12 77.0 314 27.7
Gorai.012G050800 Gossypium raimondii HOM05D000007 ORTHO05D000039 3.7e-12 77.0 341 27.3
C05p50290 Brassica napus HOM05D000007 ORTHO05D011249 4.9e-12 76.6 286 24.8
Thecc.04G089800 Theobroma cacao HOM05D000007 ORTHO05D000039 4.9e-12 76.6 287 29.3
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 8.3e-12 75.9 339 26.5
BcaB04g18889 Brassica carinata HOM05D000007 ORTHO05D011249 1.1e-11 75.5 273 25.6
ATR0736G009 Amborella trichopoda HOM05D013040 ORTHO05D011366 3.2e-11 73.9 330 25.5
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 7.0e-11 72.8 290 25.5
Aqoxy4G00563 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 9.2e-11 72.4 288 25.7
Carub.0003s1596 Capsella rubella HOM05D000007 ORTHO05D000017 9.2e-11 72.4 306 25.2
A05p33290 Brassica napus HOM05D000007 ORTHO05D011249 1.2e-10 72.0 257 27.2
Gohir.A05G369700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.2e-10 72.0 290 29.0
ATR0605G101 Amborella trichopoda HOM05D011842 ORTHO05D011070 1.6e-10 71.6 147 28.6
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 1.6e-10 71.6 290 26.2
BolC5t33779H Brassica oleracea HOM05D000007 ORTHO05D011249 2.0e-10 71.2 282 25.5
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.0e-10 71.2 283 25.4
AT3G16210 Arabidopsis thaliana HOM05D000007 ORTHO05D011249 2.7e-10 70.9 308 23.4
Lalb_Chr07g0187081 Lupinus albus HOM05D002809 ORTHO05D004563 3.5e-10 70.5 278 27.0
Hma1.2p1_0270F.1_g108160 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.6e-10 70.1 364 25.0
PSO386G0261 Papaver somniferum HOM05D000007 ORTHO05D000676 7.8e-10 69.3 173 28.9
Atru.chr1.2429 Acer truncatum HOM05D000007 ORTHO05D000017 1.3e-09 68.6 302 24.2
ATR0681G231 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.7e-09 68.2 131 33.6
COL.COLO4_11924 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.3e-09 67.8 272 25.0
SalBow7G3210 Salvia bowleyana HOM05D000007 ORTHO05D000521 2.3e-09 67.8 298 25.2
ATR1134G109 Amborella trichopoda HOM05D041856 ORTHO05D011070 3.0e-09 67.4 202 28.7
Migut.F01618 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.0e-09 67.4 285 22.8
Nn1g09442 Nelumbo nucifera HOM05D007726 ORTHO05D008819 3.0e-09 67.4 364 23.6
Migut.F01612 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.9e-09 67.0 283 22.6
TPR.G19021 Trifolium pratense HOM05D000007 ORTHO05D000017 5.0e-09 66.6 338 23.7
Carub.0001s2930 Capsella rubella HOM05D000171 ORTHO05D000101 6.6e-09 66.2 272 22.8
AagrBONN_evm.TU.Sc2ySwM_344.1789 Anthoceros agrestis HOM05D002809 ORTHO05D021244 8.6e-09 65.9 363 23.4
Glyma.17G008200 Glycine max HOM05D000007 ORTHO05D000017 8.6e-09 65.9 322 23.9
ATR0737G124 Amborella trichopoda HOM05D012411 ORTHO05D011070 1.1e-08 65.5 158 31.6
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.1e-08 65.5 293 24.9
AagrBONN_evm.TU.Sc2ySwM_228.5199 Anthoceros agrestis HOM05D008059 ORTHO05D009361 1.9e-08 64.7 199 32.7
TPR.G17766 Trifolium pratense HOM05D000007 ORTHO05D000521 1.9e-08 64.7 262 25.6
TWI31G1306 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.9e-08 64.7 319 23.8
COL.COLO4_29197 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.5e-08 64.3 274 25.9
Potri.006G170300 Populus trichocarpa HOM05D000007 ORTHO05D000039 2.5e-08 64.3 332 24.7
EL10Ac8g18413 Beta vulgaris HOM05D000007 ORTHO05D000017 4.3e-08 63.5 301 25.6
Dinv06539 Davidia involucrata HOM05D000007 ORTHO05D000039 4.3e-08 63.5 168 30.4
Gohir.D12G088200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.3e-08 63.5 222 28.8
Rhsim08G0197100 Rhododendron simsii HOM05D000171 ORTHO05D000101 4.3e-08 63.5 167 27.5
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 4.3e-08 63.5 336 22.0
CSS0016805 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000676 5.6e-08 63.2 296 22.6
Medtr3g007360 Medicago truncatula HOM05D000007 ORTHO05D000017 5.6e-08 63.2 355 23.1
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 5.6e-08 63.2 264 26.1
PSO675G8333 Papaver somniferum HOM05D000007 ORTHO05D000676 5.6e-08 63.2 264 25.8
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 5.6e-08 63.2 286 24.1
Nitab4.5_0001418g0080 Nicotiana tabacum HOM05D000007 ORTHO05D005385 7.3e-08 62.8 273 22.7
Rhsim01G0071800 Rhododendron simsii HOM05D000007 ORTHO05D000521 7.3e-08 62.8 351 25.4
ATR0580G250 Amborella trichopoda HOM05D007162 ORTHO05D007631 9.5e-08 62.4 179 29.1
Cc11_g07960 Coffea canephora HOM05D000007 ORTHO05D000521 9.5e-08 62.4 314 24.5
Dinv36838 Davidia involucrata HOM05D001394 ORTHO05D001237 9.5e-08 62.4 161 31.1
FAN05G0839 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.5e-08 62.4 291 24.4
PGSC0003DMG400004614 Solanum tuberosum HOM05D007162 ORTHO05D007631 9.5e-08 62.4 287 22.6
Dinv17447 Davidia involucrata HOM05D000007 ORTHO05D000676 1.2e-07 62.0 241 25.3
Dinv20225 Davidia involucrata HOM05D000007 ORTHO05D000521 1.2e-07 62.0 197 26.9
Gohir.A12G083765 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.2e-07 62.0 293 26.6
Hma1.2p1_1251F.1_g270320 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.2e-07 62.0 386 23.6
Rhsim04G0041100 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.2e-07 62.0 268 25.7
Sopen12g033850 Solanum pennellii HOM05D007162 ORTHO05D007631 1.2e-07 62.0 291 23.0
arahy.Tifrunner.gnm1.ann1.2YC2W5 Arachis hypogaea HOM05D000007 ORTHO05D000017 1.6e-07 61.6 291 22.7
AUR62003167 Chenopodium quinoa HOM05D002420 ORTHO05D002422 1.6e-07 61.6 276 25.7
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.6e-07 61.6 306 26.5
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.6e-07 61.6 264 26.1
Rhsim01G0013300 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.6e-07 61.6 257 27.2
Duzib205G1409 Durio zibethinus HOM05D000171 ORTHO05D000101 2.1e-07 61.2 267 23.2
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 2.8e-07 60.8 260 28.1
ClCG10G019730 Citrullus lanatus HOM05D023299 ORTHO05D000039 2.8e-07 60.8 267 27.0
Rhsim01G0072600 Rhododendron simsii HOM05D000007 ORTHO05D000521 2.8e-07 60.8 351 25.4
Rhsim11G0104200 Rhododendron simsii HOM05D007560 ORTHO05D005947 2.8e-07 60.8 306 22.5
AagrBONN_evm.TU.Sc2ySwM_362.2496 Anthoceros agrestis HOM05D004302 ORTHO05D009361 3.6e-07 60.5 284 25.7
arahy.Tifrunner.gnm1.ann1.46HQZD Arachis hypogaea HOM05D000007 ORTHO05D000017 3.6e-07 60.5 325 24.6
arahy.Tifrunner.gnm1.ann1.SE5UPX Arachis hypogaea HOM05D000007 ORTHO05D000017 3.6e-07 60.5 307 24.8
Carub.0001s2255 Capsella rubella HOM05D000171 ORTHO05D000101 3.6e-07 60.5 244 25.0
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.6e-07 60.5 218 28.0
DCAR_012072 Daucus carota HOM05D000007 ORTHO05D013591 3.6e-07 60.5 184 26.6
Carub.0004s0787 Capsella rubella HOM05D000171 ORTHO05D000101 4.7e-07 60.1 315 21.9
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 4.7e-07 60.1 319 24.5
SalBow1G2515 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.7e-07 60.1 328 22.0
EL10Ac6g14933 Beta vulgaris HOM05D002420 ORTHO05D002422 6.2e-07 59.7 166 25.9
Eucgr.B00632 Eucalyptus grandis HOM05D000007 ORTHO05D007631 6.2e-07 59.7 287 23.0
PSO210G7490 Papaver somniferum HOM05D000007 ORTHO05D000676 6.2e-07 59.7 238 24.4
Psat5g230320 Pisum sativum HOM05D000007 ORTHO05D000017 6.2e-07 59.7 314 25.8
BcaC09g48093 Brassica carinata HOM05D000209 ORTHO05D000129 8.0e-07 59.3 289 23.9
MELO3C009863.2 Cucumis melo HOM05D000007 ORTHO05D000039 8.0e-07 59.3 317 24.6
FAN26G0074 Fragaria x ananassa HOM05D000007 ORTHO05D019120 8.0e-07 59.3 293 25.3
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 8.0e-07 59.3 294 24.8
Medtr7g060940 Medicago truncatula HOM05D000007 ORTHO05D000017 8.0e-07 59.3 311 22.8
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 8.0e-07 59.3 260 25.4
HPP92_017256 Vanilla planifolia HOM05D007162 ORTHO05D007631 8.0e-07 59.3 272 24.6
AL1G45300 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-06 58.9 265 24.2
AL6G22480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-06 58.9 325 20.6
arahy.Tifrunner.gnm1.ann1.AP71S7 Arachis hypogaea HOM05D000007 ORTHO05D000017 1.1e-06 58.9 291 24.1
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 1.1e-06 58.9 296 24.7
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 1.1e-06 58.9 296 24.7
HanXRQChr08g0215021 Helianthus annuus HOM05D000007 ORTHO05D000017 1.1e-06 58.9 307 22.8
Rhsim08G0210600 Rhododendron simsii HOM05D000171 ORTHO05D000101 1.1e-06 58.9 170 27.6
SalBow7G4283 Salvia bowleyana HOM05D000007 ORTHO05D000521 1.1e-06 58.9 310 26.8
AT1G12870 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.4e-06 58.5 341 23.8
BraA05t22154Z Brassica rapa HOM05D000007 ORTHO05D000017 1.4e-06 58.5 170 27.6
Aqoxy1G02131 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.8e-06 58.2 325 24.6
Aqoxy5G04154 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.8e-06 58.2 284 25.4
Aqoxy6G01619 Aquilegia oxysepala HOM05D021765 ORTHO05D018413 1.8e-06 58.2 310 24.2
CsaV3_3G041370 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.8e-06 58.2 300 24.0
Medtr5g057040 Medicago truncatula HOM05D011496 ORTHO05D000589 1.8e-06 58.2 176 26.1
PSO675G4085 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-06 58.2 286 25.5
COL.COLO4_25856 Corchorus olitorius HOM05D000007 ORTHO05D000521 2.3e-06 57.8 297 24.9
Glyma.07G265800 Glycine max HOM05D000007 ORTHO05D000017 2.3e-06 57.8 292 23.3
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.3e-06 57.8 292 24.7
Medtr3g024040 Medicago truncatula HOM05D000007 ORTHO05D000017 2.3e-06 57.8 332 22.9
Prupe.1G147000 Prunus persica HOM05D000007 ORTHO05D000521 2.3e-06 57.8 339 24.5
SGA_v2.0_scaffold59G20641 Striga asiatica HOM05D000007 ORTHO05D000017 2.3e-06 57.8 290 23.1
FAN12G3349 Fragaria x ananassa HOM05D000007 ORTHO05D000521 3.1e-06 57.4 359 22.3
Medtr5g057710 Medicago truncatula HOM05D000007 ORTHO05D000017 3.1e-06 57.4 254 24.0
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 3.1e-06 57.4 329 23.1
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 3.1e-06 57.4 336 23.8
Potri.001G224200 Populus trichocarpa HOM05D000007 ORTHO05D000521 3.1e-06 57.4 335 24.5
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 3.1e-06 57.4 252 21.8
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 4.0e-06 57.0 281 23.8
Aqoxy3G01256 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 4.0e-06 57.0 394 24.4
Aqoxy4G03268 Aquilegia oxysepala HOM05D026885 ORTHO05D026721 4.0e-06 57.0 166 28.9
Aqoxy5G03339 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 4.0e-06 57.0 180 27.8
CARHR213730 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.0e-06 57.0 239 23.4
COL.COLO4_25854 Corchorus olitorius HOM05D000007 ORTHO05D000521 4.0e-06 57.0 301 24.3
FvH4_4g16630 Fragaria vesca HOM05D000007 ORTHO05D000521 4.0e-06 57.0 359 22.6
Lj6g0019357 Lotus japonicus HOM05D000007 ORTHO05D000017 4.0e-06 57.0 298 24.2
PSO017G0843 Papaver somniferum HOM05D000664 ORTHO05D000491 5.2e-06 56.6 234 27.4
PSO541G6116 Papaver somniferum HOM05D000007 ORTHO05D000039 5.2e-06 56.6 176 30.1
PSO675G0305 Papaver somniferum HOM05D000007 ORTHO05D000039 5.2e-06 56.6 176 25.6
QL01p045544 Quercus lobata HOM05D000007 ORTHO05D000521 5.2e-06 56.6 282 27.0
RcHm_v2.0_Chr2g0101871 Rosa chinensis HOM05D002420 ORTHO05D002422 5.2e-06 56.6 286 22.4
vmacro12404 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.2e-06 56.6 314 23.2
arahy.Tifrunner.gnm1.ann1.6D36QA Arachis hypogaea HOM05D000007 ORTHO05D000017 6.8e-06 56.2 245 25.7
Cfa000423 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.8e-06 56.2 162 25.3
MD16G1129700 Malus domestica HOM05D000007 ORTHO05D000039 6.8e-06 56.2 304 22.7
PSO675G6799 Papaver somniferum HOM05D000007 ORTHO05D000676 6.8e-06 56.2 270 23.0
PSO832G0485 Papaver somniferum HOM05D000007 ORTHO05D000017 6.8e-06 56.2 308 23.7
Prupe.8G003300 Prunus persica HOM05D000007 ORTHO05D000039 6.8e-06 56.2 186 27.4
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 6.8e-06 56.2 179 28.5
Actinidia10779 Actinidia chinensis HOM05D000007 ORTHO05D000521 8.9e-06 55.8 151 28.5
Actinidia35052 Actinidia chinensis HOM05D000007 ORTHO05D000676 8.9e-06 55.8 283 24.4
Aqoxy3G01327 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 8.9e-06 55.8 167 30.5
Carub.0001s3824 Capsella rubella HOM05D000171 ORTHO05D000101 8.9e-06 55.8 255 22.4
AUR62039089 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.9e-06 55.8 152 25.7
MBI19_g26733_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 8.9e-06 55.8 307 23.8
PSO541G1237 Papaver somniferum HOM05D000007 ORTHO05D000039 8.9e-06 55.8 165 27.3


User provided reference genes

Program Settings